RNA id: TU234271


Basic Information

Item Value
RNA id TU234271
length 1187
lncRNA type sense_over
GC content 0.34
exon number 2
gene id LOC122329227
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15621942 ~ 15717250 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCATGTGCACAAAGGCAAGCTTTATTACTGGAAAGACAAAGGgagaagtcattttaaaaatgaacattttgaaataaaaccgtgtgaaacaaaaccaaatagTTACCTCAAAAAATGAATCCAAATAAATAAGACTAAGCAATTTTACATCAAGCACATCTTTGTCAATACacaacaagaacaaatatttaatctcgtgacattcttttaaatgtcttaCAAAGATTACAAAACAGGATATGTACAACTGAAGGACTAGAGGACATGCTTGAAGTGTATTTGTTCCCAACATTGTGCAATGGCAGCATAATGACCGAATGTCCATCTCCATCTGGGACGCTCACATTACCCAGAACTTAAATTGGCAGCTACAATGTCTGACCAGCCATGCGACATGTATACACGCTGTTCATACTCCCTAGCACCCAAAATTCATCTTCAGTTTCTTTATTTACGCAGTCACTAGACAATGCAAAAAGGAATTTGGTGTGTGATCACAGTGGCAGAACTTGTAAACAGCTCGCATCTTCCCTTTCGCCACTGATGATtgaacaaaatgagaaaaatattgaCTTCAAGTatacacaaagcaaaaacaattatttgaacaacagttcaaaaatggaaaaatatctTTCGTTAAACAGGACCAGCCTGTTCAGTTTTATTCCAAAAGTCGGCTTCCGTTTCCAGTTTGACTTTGACTGATTCTCAAACATAAAAGCCCTTATCAGGTCAGCTGATCCATATATTTAAAAGGTCCAGTCTGAATTTCCTTCCAGTCCATCTGCTCCTCATGCATTAACCTCCCTTTATGCTCATGAACAGAACACTAATATTCCTATTTggttgaaaagaaaaaactaaatagtgTTGCACTCCAATGGTCATTTTTCATCTAATTACTTTAACAAAGTCTGAACAGAGTCACAATATATTGGCTTGTTTTTACAGCAGTGCTGATGTATGTCCACATAAATATACGTATGTCCACAAAGCAGTAGCATGACTTTATAAtagccttttttgttttaattattgccACTGTACACACCTTGCATTATAAGCACTTGAACCATAATTATTGCTTTGTGGTGAAAAGCAGACTTCAAGATTAGCACTTTGCacaagaaaacatgttttttttttttttttttttttttttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0046530 photoreceptor cell differentiation biological_process
GO:0042461 photoreceptor cell development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234264 lncRNA downstream 14862 15603848 ~ 15607080 (-) True G158174
TU234059 lncRNA downstream 144173 15476487 ~ 15477769 (-) True G158024
TU233990 lncRNA downstream 283099 15210228 ~ 15338843 (-) True G157984
TU234037 lncRNA downstream 325306 15295888 ~ 15296636 (-) True G158019
TU234028 lncRNA downstream 417992 15202366 ~ 15203950 (-) True G158014
TU234308 lncRNA upstream 25924 15728154 ~ 15789331 (-) True G158198
TU234328 lncRNA upstream 110051 15812281 ~ 15812927 (-) True G158208
TU234357 lncRNA upstream 262523 15964753 ~ 15965763 (-) True G158227
TU234368 lncRNA upstream 305876 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 399395 16101625 ~ 16102214 (-) True G158282
XM_043225288.1 mRNA downstream 1138 15611615 ~ 15620804 (-) True galnt6
XM_043225304.1 mRNA downstream 23916 15510955 ~ 15598026 (-) True hspg2
XM_043224314.1 mRNA downstream 115296 15502428 ~ 15506646 (-) True si:dkey-205h13.2
XM_043223972.1 mRNA downstream 131675 15479040 ~ 15490267 (-) False tmem269
XM_043225119.1 mRNA upstream 17028 15719258 ~ 15724002 (-) False dtx3
XM_043225121.1 mRNA upstream 17028 15719258 ~ 15724002 (-) False dtx3
XM_043225120.1 mRNA upstream 17028 15719258 ~ 15724001 (-) False dtx3
XM_043225125.1 mRNA upstream 17028 15719258 ~ 15724001 (-) False dtx3
XM_043225126.1 mRNA upstream 17028 15719258 ~ 15724001 (-) False dtx3
XR_006247853.1 other downstream 147565 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1032349 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1291158 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 2339615 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 2404534 13141078 ~ 13217408 (-) True G157367
TU234366 other upstream 305876 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 441603 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 538580 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 655422 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1474422 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile