RNA id: XR_006247887.1


Basic Information

Item Value
RNA id XR_006247887.1
length 517
lncRNA type inter_gene
GC content 0.55
exon number 4
gene id LOC122329227
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15621942 ~ 15717250 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGCTGCTTCACCAGTTGTATAAACCCGACTAAACAGTAAACCCGTGGTGTATTTTATCGTGAGTTCCCACTCTGAAACTTAATATCTAAACATCATGTTAACTTATTAATCTAAACATTGAAGaagGTAGCCTGTCAGGAACCACATGGCATTTCTGCGACCATCATCTCACAACAGACGCTCAGTGTTCCCCGGTGAGATTGGGAGCTAGGCTGTGTGAAAGTCTCTTGGCTGCCGAGTCGGGGTCTCCACCTCAGCCACATGGCCTCCTGGCAGCGGCCCTCTTTTGGACACCGGCAGCAGCTTGTGCCCCACGCCCCTCACAGATGCTGTGTCTTGAGACAGATGTGCACCCCAGCTCGATATCCAAAGAATCTAGGTGGAGGAGAGGAGCTCGGACTTGCTGGGCAGGTGCAGCAGGCGTTTGGAGAGCCGGCGGGTCGGGCTGGGTTTGGCGAGCGGCTGTAGCTTGTTGATGCAAGCCAGGGCAGCTGTGCGGAACACGCTGTGGATGC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234287 lncRNA downstream 17899 15680886 ~ 15681872 (-) True G158188
TU234264 lncRNA downstream 92691 15603848 ~ 15607080 (-) True G158174
TU234059 lncRNA downstream 222002 15476487 ~ 15477769 (-) True G158024
TU233990 lncRNA downstream 360928 15210228 ~ 15338843 (-) True G157984
TU234308 lncRNA upstream 10910 15728154 ~ 15789331 (-) True G158198
TU234328 lncRNA upstream 95037 15812281 ~ 15812927 (-) True G158208
TU234357 lncRNA upstream 247509 15964753 ~ 15965763 (-) True G158227
TU234368 lncRNA upstream 290862 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 384381 16101625 ~ 16102214 (-) True G158282
XM_043224806.1 mRNA downstream 40364 15622481 ~ 15659407 (-) False adcy6b
XM_043224803.1 mRNA downstream 41824 15622481 ~ 15657947 (-) False adcy6b
XM_043224802.1 mRNA downstream 41824 15622481 ~ 15657947 (-) True adcy6b
XM_043224804.1 mRNA downstream 41843 15622481 ~ 15657928 (-) False adcy6b
XM_043224800.1 mRNA downstream 41847 15622481 ~ 15657924 (-) False adcy6b
XM_043225119.1 mRNA upstream 2014 15719258 ~ 15724002 (-) False dtx3
XM_043225121.1 mRNA upstream 2014 15719258 ~ 15724002 (-) False dtx3
XM_043225120.1 mRNA upstream 2014 15719258 ~ 15724001 (-) False dtx3
XM_043225125.1 mRNA upstream 2014 15719258 ~ 15724001 (-) False dtx3
XM_043225126.1 mRNA upstream 2014 15719258 ~ 15724001 (-) False dtx3
XR_006247853.1 other downstream 225394 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1110178 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1368987 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 2417444 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 2482363 13141078 ~ 13217408 (-) True G157367
TU234366 other upstream 290862 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 426589 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 523566 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 640408 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1459408 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile