RNA id: TU234308


Basic Information

Item Value
RNA id TU234308
length 1063
lncRNA type read_through
GC content 0.37
exon number 2
gene id G158198
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15728154 ~ 15789331 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agttttttttTGTTGTTTAGAGACAGTTTATTAGAAATATGTAGACAAAAACCTCACTGCGTTTAACAAACTGAAATTTATAAACCTGAATGGACAGGTCACAACATTGTTTTCATCTTTTAGTCACACCTGCATTGATATTAAGAGTGCAAACACAAATTGGTCATCTATTGATAAGTTACCCTTTGTTCTGTACAGCGGTGAggcatatgctttttttttttaattacttctCTTTACATATATGGAAGAAACCAGTGTACAATTTCCTGCTACACGTCTAAGTGTgatacaaaacaacaaacactaaCTGCCAACCTGAAATCAATTCATAAAGCAGCGTGTACAGACAGGACTATGTACTTTGAACATGTCGGATTAACACAAACCTATCCGAGGGGCAAAACTGCAgctaaaacacataaaacaggGGTTGAACAATGAATCAGTGCAAGGGCTTTGAATACGCCGTTCCGATCTCAAATGCAGCACTAGTGAAAATCAAATGTCTTGGCTGGCATTTGCAATGAAGCAGCACGTGCCAATGCTTCCTTCGCTCACACACGAGGAAATCTGAGCctcaacacaaacaaacaaaagaacagaattaaataaaaatgtacagtttgaATGAGAGGGAGAAGGCAGAATATGTTGATAAAGTCATTCATGTCCTTTTTCCATTACTACAATTTACAATGTATACGTTACATGATGCAATAACCCCACTGACATAGAGGAAAAAGCCCAAGACTGTAAAAGCCATTGAGTAAACTGACCATAAATGGTGTCCACAATACATCATTGAGAGCTTGTAATTGTCCATGCAGAACAGAAAAGTAAAGAGTGTATTGTCGAAGGGCTGACGTTGCCATCAACACAACAGTAAAAATTCATCCCTTGTGACTTTCTGCAGAAAGACCTTGAAAAACAGTTTCAAAAACGATGCAATTTTTAAATGGCTACCAACTCAAACTTAGTCTCTCTCTTCATTTAAGTGTTAAGTGAAAATTCTTGCTTTCTTCTGCATGACGGTTTGCTCTTCCCTTTACTCAAGGTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247888.1 lncRNA downstream 10910 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA downstream 10910 15699771 ~ 15717244 (-) False LOC122329227
TU234271 lncRNA downstream 25924 15621942 ~ 15702230 (-) True LOC122329227
TU234287 lncRNA downstream 46282 15680886 ~ 15681872 (-) True G158188
TU234264 lncRNA downstream 121074 15603848 ~ 15607080 (-) True G158174
TU234328 lncRNA upstream 22950 15812281 ~ 15812927 (-) True G158208
TU234357 lncRNA upstream 175422 15964753 ~ 15965763 (-) True G158227
TU234368 lncRNA upstream 218775 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 312294 16101625 ~ 16102214 (-) True G158282
TU234428 lncRNA upstream 328550 16117881 ~ 16118214 (-) True G158284
XM_043225119.1 mRNA downstream 4152 15719258 ~ 15724002 (-) False dtx3
XM_043225121.1 mRNA downstream 4152 15719258 ~ 15724002 (-) False dtx3
XM_043225120.1 mRNA downstream 4153 15719258 ~ 15724001 (-) False dtx3
XM_043225125.1 mRNA downstream 4153 15719258 ~ 15724001 (-) False dtx3
XM_043225126.1 mRNA downstream 4153 15719258 ~ 15724001 (-) False dtx3
XM_043225011.1 mRNA upstream 25378 15814709 ~ 15860823 (-) False scn8aa
XM_043225006.1 mRNA upstream 25378 15814709 ~ 15860823 (-) False scn8aa
XM_043225012.1 mRNA upstream 25378 15814709 ~ 15860823 (-) False scn8aa
XM_043225007.1 mRNA upstream 25378 15814709 ~ 15860823 (-) False scn8aa
XM_043225010.1 mRNA upstream 25378 15814709 ~ 15860270 (-) True scn8aa
TU234273 other downstream 10904 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 10904 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 253777 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1138561 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1397370 14326966 ~ 14330784 (-) True G157909
TU234366 other upstream 218775 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 354502 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 451479 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 568321 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1387321 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile