RNA id: TU234426


Basic Information

Item Value
RNA id TU234426
length 590
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G158282
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16101625 ~ 16102214 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATTCATTGAACATTAACATGTACTTTTGTCCACTAGAGGGCATCATTAATTGCTCTTTTCTCCCCCAAAGTGTCACATCGGGTTCTTGTTGCCTTTTCTCTCAGCACAGCAAACTGTGCCACAGCCTGATCTGGTTCATGAATACAGGGTCACTTCAGACGTCCTTAAGGAGATATAAGGGATCTATTTCCTTTTTCCCTCAATCCATTTCTTATAAACCGTAAACAATGTGTATCCTGTCTTACAAGCCACGCAATCTCGCAATTGTTAGAATTGTTGTTCGGCATGAGAGACACTAAAAGACCCAACACCCCTTGGGAACTACCAAGACACACCTCGGTGTTGTTGAACAACATTTCACGGACACAATACTGAATGCATCCTTCACTATCATGTTTCAGACAGACCTATATTTACCCGGCGCAAATAGATATCTCACGTATCTTATTCATAGAAACGAGACTGCCAAATGGGTGTCTTTCCAGTATAAATCCCTTCCTACGCACACCGACACGCAGAGAAGGCCAAAAGAGCAGATGTTCCACTGATTGATGGATATTTATAAGATGTTTATctcgggtttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234368 lncRNA downstream 92710 16008106 ~ 16008915 (-) False G158231
TU234357 lncRNA downstream 135862 15964753 ~ 15965763 (-) True G158227
TU234328 lncRNA downstream 288698 15812281 ~ 15812927 (-) True G158208
TU234308 lncRNA downstream 312294 15728154 ~ 15789331 (-) True G158198
XR_006247888.1 lncRNA downstream 384381 15699771 ~ 15717244 (-) False LOC122329227
TU234428 lncRNA upstream 15667 16117881 ~ 16118214 (-) True G158284
TU234492 lncRNA upstream 144802 16247016 ~ 16247293 (-) True G158333
TU234496 lncRNA upstream 253155 16355369 ~ 16358705 (-) True G158336
TU234531 lncRNA upstream 314711 16416925 ~ 16439280 (-) True G158353
TU234534 lncRNA upstream 319305 16421519 ~ 16439280 (-) False G158353
XM_043225249.1 mRNA downstream 1866 16083732 ~ 16099759 (-) True acvr1ba
XM_043224111.1 mRNA downstream 78255 16021317 ~ 16023370 (-) False dnajc22
XM_043224110.1 mRNA downstream 78256 16021317 ~ 16023369 (-) True dnajc22
XM_043225433.1 mRNA downstream 81978 16009720 ~ 16019647 (-) False ikzf4
XM_043225432.1 mRNA downstream 81978 16009720 ~ 16019647 (-) False ikzf4
XM_043224814.1 mRNA upstream 194 16102408 ~ 16115284 (-) True acvrl1
XM_043224262.1 mRNA upstream 16178 16118392 ~ 16126411 (-) True ankrd33aa
XM_043224214.1 mRNA upstream 87217 16189431 ~ 16192678 (-) True sp5l
XM_043225544.1 mRNA upstream 120595 16222809 ~ 16234574 (-) False b4galnt1a
XM_043225543.1 mRNA upstream 120595 16222809 ~ 16234574 (-) True b4galnt1a
TU234366 other downstream 92710 16008106 ~ 16008915 (-) True G158231
TU234273 other downstream 384375 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 384375 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 627248 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1512032 14581094 ~ 14589593 (-) True fitm2
TU234433 other upstream 41619 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 138596 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 255438 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1074438 17176652 ~ 17179779 (-) False slc48a1a
TU234899 other upstream 1237053 17339267 ~ 17343385 (-) True G158609

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU21333 True 1885 lncRNA 0.40 1 CI01000001 10655387 ~ 10657271 (+)