RNA id: TU234682


Basic Information

Item Value
RNA id TU234682
length 500
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G158462
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16607461 ~ 16607960 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcAGGTTGAAAACCAAAATCAGGATTTAATTACAATACGAGTAGAGATCTTAAATTAAGagatttcaaaagaacaaaggGGGGCGAGAGTTACTCAGGCTAAAATCCAGTAAGCGCCCATGTTTATTAACAGACTACCCTTAAAAAGAACCAACGCTAGTTCGGAggatgtataaataaaataatgctgagTGCAATTCACATGTAATTAATGAAGATATTTTCGATTAATGAAGTCATACCATTTTCCGACTACGCGGCCTTTTCATAAGTCATATAAAACATTCACTTCTACAGGGAGGGGAGGGGAAGAAAACAACAGGACACGAATCAAAAACAGTATCATCTTGGGAGATTCAAGATTTTCCATTAACTGTATATGCTAATTAAACTGTCACTGATTCAAGGACAGGGTTCAGTAATTCACAAGCAGTagcataaataaaagaaatatacgtgaacaatattacataaatacacaaatgctATGCACCATTTTAC

Function

GO: NA

KEGG:

id description
ko04138 Autophagy - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234642 lncRNA downstream 54066 16553043 ~ 16553395 (-) True G158432
TU234622 lncRNA downstream 76365 16530052 ~ 16531096 (-) True G158417
TU234605 lncRNA downstream 106611 16498369 ~ 16500850 (-) True G158404
TU234575 lncRNA downstream 163424 16443806 ~ 16444037 (-) True G158388
TU234569 lncRNA downstream 173832 16432961 ~ 16433629 (-) True G158383
TU234703 lncRNA upstream 115971 16723931 ~ 16724403 (-) True G158481
TU234705 lncRNA upstream 119478 16727438 ~ 16727715 (-) True G158483
TU234706 lncRNA upstream 120141 16728101 ~ 16728343 (-) True G158484
TU234860 lncRNA upstream 474247 17082207 ~ 17082552 (-) False G158587
TU234861 lncRNA upstream 474247 17082207 ~ 17082684 (-) True G158587
XM_043224027.1 mRNA downstream 61773 16541514 ~ 16545688 (-) True LOC122328366
XM_043224307.1 mRNA downstream 101658 16488226 ~ 16505803 (-) False ribc1
XM_043224308.1 mRNA downstream 113002 16488226 ~ 16494459 (-) True ribc1
XM_043225228.1 mRNA downstream 205756 16399805 ~ 16401705 (-) True tmem107l
XM_043224317.1 mRNA upstream 1518 16609478 ~ 16616339 (-) True LOC122328572
XM_043225250.1 mRNA upstream 66277 16674237 ~ 16677367 (-) True LOC122329052
XM_043225251.1 mRNA upstream 72346 16680306 ~ 16681688 (-) True LOC122329053
XM_043225103.1 mRNA upstream 224125 16832085 ~ 17007286 (-) True plxna2
XM_043225098.1 mRNA upstream 563153 17171113 ~ 17176489 (-) True hrct1
TU234495 other downstream 248756 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 364066 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 437627 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 598546 16008106 ~ 16008915 (-) True G158231
TU234274 other downstream 890211 15699269 ~ 15717250 (-) False LOC122329227
TU234864 other upstream 568692 17176652 ~ 17179779 (-) False slc48a1a
TU234899 other upstream 731307 17339267 ~ 17343385 (-) True G158609
TU235255 other upstream 1437978 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 1623683 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 2139431 18747391 ~ 18754712 (-) True G159076

Expression Profile