RNA id: TU234899


Basic Information

Item Value
RNA id TU234899
length 1230
RNA type TUCP
GC content 0.39
exon number 4
gene id G158609
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17339267 ~ 17343385 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGTTCTGTGGGTGAGCTTGTGGTGGCTTCGCACCGTTGTGCTTTGGCTTGAACGCTGCTTACTTTCTACCAGTTGTCGGTCTGAAGTGTAACTTTAATAATAGTGACCTGCACCTTCAACTAGAAGTAGTTTATCCGCGACTTTAACACTTCAAGCagGTGTCCGTTTCACTACAGCCATGACTTTCACCATGACTAGCATTTCACCTACTGggATAGAAGTTGCGTCAACAACTGCAGCTCCACCGCAAACAGACATGACTGTCATCGGAGTGGTGATTGCCCTGATCCTGCTGACCCTTGTTGTCTGCGGGTTCCTGCTGTACAGATACCTGTGCCACAGTAAGGGCGTTTACAGAACCGCAGGTGAGCCCGCTCCAGGAGTGGACCCTGATCAGGTCTACAATGACACCGTCACCGAAAACAAGAAGGAATACTTCATCTGAACTGCTTCGCATCGGAGGGATTTACCCCGTGATCAGTATGCATGGGCTGCTGCAGACATCTAAACGGTCTATGTAGAGACATACGGGACATTAACCACTAGTCTGTGCTGTGTGAAAGAATGTTTAGTTGAAGGGATACAGGTCGAGTTTTATGTTGGGAGGATAAGCCGGAAGTTAAAATTTGTTCATTCATGAGGTCAATAAGCTCACCGTCGGTTTTCGTATGGTAAAGTTAACGGGGAAGTTACTTTTCCTGTCATATTGTTATGCCTTTTGTATATAGTTTatagttcactccaaaaacaaaacaaaaaaaacctcgcTGCTTCATCAGAAATTACAAGACGTTCATATGGAGTAGTTATCAACAAGTTATTTATCAGTAACTATGGAATTATTATGAGTTATTACTAGAGTTCAGGTAGCATAAGTGGCACTGCATCTCAATCAAcaaatttggttttatttagttataaatCAATATTGTGTTAATTTGCAACTTTTCAATATGCCTTTtgcatttgattacattttttttttaattatttattggcAGAATTTTTACATTATGAATAGTTGGAGAGTCCGCTATTACAGTGccttgtaaaacattttaaatgtattttacttttttttttttaaattgaaacattttataattcaaaatgtatttttgttacgTAGGCATGCCAAATATAATACCTCTGTCATTatttgtaaaacacacacatgctgatCATAATATCAAATGCATATATGATACTTGATATTTTTGTGCAGGG

Function

GO:

id name namespace
GO:0008537 proteasome activator complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234898 lncRNA downstream 348 17311328 ~ 17338919 (-) False G158608
TU234897 lncRNA downstream 4022 17333844 ~ 17335245 (-) True G158608
TU234890 lncRNA downstream 47724 17289971 ~ 17291543 (-) True G158605
TU234874 lncRNA downstream 113698 17152825 ~ 17225569 (-) True G158591
TU234861 lncRNA downstream 256583 17082207 ~ 17082684 (-) True G158587
TU234920 lncRNA upstream 39957 17383342 ~ 17386554 (-) True G158628
TU234925 lncRNA upstream 50636 17394021 ~ 17395422 (-) True G158632
TU234910 lncRNA upstream 70318 17413703 ~ 17422305 (-) False coq10a
TU235009 lncRNA upstream 403145 17746530 ~ 17748502 (-) True G158706
XR_006247788.1 lncRNA upstream 456457 17799842 ~ 17844102 (-) True LOC122328377
XM_043225290.1 mRNA downstream 8380 17316628 ~ 17330887 (-) False pou6f1
XM_043225289.1 mRNA downstream 8380 17316628 ~ 17330887 (-) True pou6f1
XM_043225291.1 mRNA downstream 11302 17316628 ~ 17327965 (-) False pou6f1
XM_043225140.1 mRNA downstream 23877 17303211 ~ 17315390 (-) False tfcp2
XM_043225139.1 mRNA downstream 23877 17303211 ~ 17315390 (-) True tfcp2
XM_043225031.1 mRNA upstream 717 17344102 ~ 17350948 (-) True bin2a
XM_043225030.1 mRNA upstream 10762 17354147 ~ 17361384 (-) True racgap1
XM_043224254.1 mRNA upstream 74237 17417622 ~ 17422517 (-) True coq10a
XM_043225107.1 mRNA upstream 90347 17433732 ~ 17438013 (-) True tmed4
XM_043225104.1 mRNA upstream 430020 17773405 ~ 17777920 (-) True LOC122328974
TU234864 other downstream 159488 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 980562 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 1095872 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 1169433 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 1330352 16008106 ~ 16008915 (-) True G158231
TU235255 other upstream 702553 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 888258 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 1404006 18747391 ~ 18754712 (-) True G159076

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044385 False 1782 lncRNA 0.38 4 NC_007134.7 33731189 ~ 33739111 (-)
grasscarp (Ctenopharyngodon idella) TU16602 True 164 TUCP 0.43 1 CI01000001 3616248 ~ 3616411 (+)