RNA id: TU234920


Basic Information

Item Value
RNA id TU234920
length 3193
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G158628
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17383342 ~ 17386554 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgaacacagcataaaagttcattaaataGACAAAGATGGACGGTGGGTTCGTTCCTCACCAACTGGTTCCCTTGAGGTCCCCATGCTGCATACTGAAGTACAGATGTATCCTCCTCCAATGGGGTGAGGTCTGTAATCTCCCTAAGACAagtacacaaaaacacacacacaccaagatTGAACAAGATTGAACTGTAACTTCACACAGTACAAAGATTCGTCAGGTTCTCGGTCATTTTTAGAGTGCTTGAAAGGGCTTGTAAAAAACAGCACGATGCAGATGCAGAGttaatacaaaatgaaagtGAAGTGTACAGAGAGGCAGGGGTCTGGTCATGCAAATGAAACCACAGCTAAGGCTAAATGATCGGAGAATTCTGCCAAAACAAGCAAATGGGCTTCAAGACATTTATTAAAGTTTCACTGCTGTTTCACAACCACAAGCAAAAAATCTCAGGCTTTTATCAACAAACAGAACACAGCAAATCCCCGCCAGGGCATTCAATAAAATTCAGGttagtgtaaaaacatttcatccaGCAGAGACCTGTCAACTCCAGAACCAACAGTACCTTTccatacttttaaatattcaatgcCTGATGGATAACGCTGGATAAAAGCACAAACGCTGAGGGACCTCTGGActggtttttggtttttgagCACATGCCCAGTGCAGGCCATGCAGAGAGGGACCTCTGTCTCTACCTACCCGCTGGCCACTGTGTAGATTGCAAAGGATGCTGTGAAGGACTGTGAGAATACCTGGAAAGGGGCAGAGGACATGGTAGATCCCTAAATTGTACATAAACACATGTGTATGTACGGAATTGCATACTACCACATAAGCTTTCTGTagcacactcttaaaaataaaggttacaaatctatgtttttgcagtgatgccatagagacaaaaacaactttgttttGGAACCTTTTGGGGAACAGTTCCTAAAAAGAACTATTttgaagcacattttaaaaatccgACTAAAAAGaccttttctgcattttcatgGATGTTCAAGGTTCTTCACGGAAAAACTGAAGCCAATATAGAAACTTTATAGTTAAGAGTATGTATCTCTTGTGGCCGCATTCAAATTTACAGTATGCATTGGAAAGTTCAGGATTTCTTACTTAACATGCCGAATTGTCCAGTACAAGAATGCAATGCAATGAGTTCAGCTTGACTTTCCATTTAAGGAGTGAAGTTTGTTTGGGGATGGTaagatttatttgtaattttgtgatcaaaactaaactaaatactgtacagtaatattgtaaaatagtaTTACGATTTAGAATATctgtgttatatttaaatatgtgagCCTGGGCCACAAGAACAGTCATAAAGCTCTGATTTTGATCAgaaagatacaactatttgaaaaactggaatctgagggtgcaaaaaaatcaagTATTGAGAGGATCGCCTTTAAAgatgtccaaatgaagttcacAGCAATGcatatattactaatcaaaaattaagttgaaAGAAATAGtcacagtaggaaatttacaaaatgttttctatattcatgaaacatgagattactaaatatcttcaggattttttgctatgaaaaaataatgactcaTATAATGCAATGTGGactacaaatatacccgtgctacttaagactggttttgtgctccagggtcgcataaatgtaatttaaaatgtaatttattcccatgtgcaaagctgaatttttcagcAACCATCAAGCTCaagcaacatttcttattattataaaatgtaaaaagaacaaATTACGCCCTGTTGATCTGAGACCATGTGAAAACAATGTAACTCAaagctattttttctttttttttatcattctatTATACCATTTTGAACAATAGTCTATGCATACTGTGTAGTATGCAGTAAGCTTGCATTCTGAACAAAACACAGGCTCACATTCAGTTTGAACCACTCATaatctctttcattctctcacTGCATGACAACGCAACTGTGGATTCTGGTTAATGgttcatttcaatttcaatttcaagcTTCATTCAGCTGATTCATCTGAGGAGGACCGTGAACAAAAGAAGCAATTCTTtagaaaacatttgaatttatttcacAATCGGTAGCTGGAAGCTATACGGGAACGATTGACTCCTATTAGAACAGTAGATCACATGTATGAGGTCATATGACAGAATAATAGCAGCATTCGCCCAGTCTTAATCAGTGCGATCAGTTTGGTCAATATCCCTCAAAAAAAACTGCTTGCATAACATCCACATATCAGCTTGAAACCCCCTCCATTGGATCGGAGGGGGATGACCTAAATCAATAGACGTGTCCTTCGGGCCTCTAAGGACAGCTGTGCATTTCGGCAATACGGCAGGATAGTATATTACAATGCATTTGGTTATATGAAGATATATTGATCAGTTCGGTCTGTAATGATTCGTATaaaattagatgTATCGATCGCTGAAGCATCGGAACAGAACGCAGTGTGACGACAAGCCTCGAACTGCACTCGTTTCCCAAAAGCCTAACAGGATTGAAAGTCATGCCCGGCACTGCATACTAAAAACAGAACAGCTGACTGACACACCGTTCGGCAGCCACGTCAAACAATCATTTCATTAGAAGGAACGTCTGAGGTCAGCAAGACGTTGCTTTTGGaagaatttaatacttttattcggCAAGGATGCATTGAACTGATCACAATGTTGCATTAAATAGATCACATAATCTTATAGGATTtctattccaaataaaatgttattctttCAATCCTTCgtttattaaagaatcctgaaaaaatgcattagattaaaaaaaaaaattttgattaatagaaatttGAAAAGCACAACTTAACGTGCCCAAGTAAATGATTACTTAATTTACTattgataaattattaattactgaaaaaaaatatttaaacatgcaatGAGGCCATGTGAGAAAAATGTAGCCCAATGatatctgtgtatttttattaaatagatcACATTTAGGAAAATATTTCTATAGTTCAAACAAATACTATTCTTTTAAACcttcaatattttcaaaattgatgaggaaaaaaatctgcatattagaatacGTTCTGAAGATTGTGAGACACTGaagattgcttaaaaaaattagcTTTGTCATCAAAagaatacattatatttaac

Function

GO:

id name namespace
GO:0046873 metal ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234898 lncRNA downstream 44423 17311328 ~ 17338919 (-) False G158608
TU234897 lncRNA downstream 48097 17333844 ~ 17335245 (-) True G158608
TU234890 lncRNA downstream 91799 17289971 ~ 17291543 (-) True G158605
TU234874 lncRNA downstream 157773 17152825 ~ 17225569 (-) True G158591
TU234861 lncRNA downstream 300658 17082207 ~ 17082684 (-) True G158587
TU234925 lncRNA upstream 7467 17394021 ~ 17395422 (-) True G158632
TU234910 lncRNA upstream 27149 17413703 ~ 17422305 (-) False coq10a
TU235009 lncRNA upstream 359976 17746530 ~ 17748502 (-) True G158706
XR_006247788.1 lncRNA upstream 413288 17799842 ~ 17844102 (-) True LOC122328377
TU235093 lncRNA upstream 557371 17943925 ~ 17944160 (-) True G158774
XM_043225030.1 mRNA downstream 21958 17354147 ~ 17361384 (-) True racgap1
XM_043225031.1 mRNA downstream 32394 17344102 ~ 17350948 (-) True bin2a
XM_043225290.1 mRNA downstream 52455 17316628 ~ 17330887 (-) False pou6f1
XM_043225289.1 mRNA downstream 52455 17316628 ~ 17330887 (-) True pou6f1
XM_043225291.1 mRNA downstream 55377 17316628 ~ 17327965 (-) False pou6f1
XM_043224254.1 mRNA upstream 31068 17417622 ~ 17422517 (-) True coq10a
XM_043225107.1 mRNA upstream 47178 17433732 ~ 17438013 (-) True tmed4
XM_043225104.1 mRNA upstream 386851 17773405 ~ 17777920 (-) True LOC122328974
XM_043225105.1 mRNA upstream 391920 17778474 ~ 17784124 (-) True pink1
XM_043224320.1 mRNA upstream 398161 17784715 ~ 17786242 (-) True LOC122328575
TU234899 other downstream 39957 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 203563 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1024637 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 1139947 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 1213508 16143833 ~ 16169834 (-) True G158288
TU235255 other upstream 659384 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 845089 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 1360837 18747391 ~ 18754712 (-) True G159076

Expression Profile