RNA id: TU235338



Basic Information


Item Value
RNA id TU235338
length 865
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G158948
representative True

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18195399 ~ 18196369 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCCTTACACGtcctgttttgctttttgtgaattttatcgTCACGAACATAAAAAGCCCCCATTATGTTGTCAGATACTAAAAAGCACTGTAATCATATTATAAAGGCATACATTAATGAACGTAATGGGCAGACAGCAAGCTCCCTGTGAACACAACTGCCTGTGTTTGGCATGGCTCACCTGTTGGCAGCGGTCACACTGATAAGGCTTCTCACCGCTGTGAACACGCTTATGTCTTTCCAGGTGGTAGCGCTGAATAAACCTCATGTCACACATATCACACCCGAATGGCTTTtcccCCGTATGGGTGAGAATGTGCCGTTTGAGGTGGTAACTACTGCGGAAAGCACTGTAGCAGTGCTCACATATGAAGTTCTTCTGCACTTGAGAGCCGAGTGAGATATCGTCATTAACGTCAGGAATCTCCACCTTCATGTcacatacagaaacaaaaaaaaaaacaaagcattcgGTCAGGATTTGAATACGAGCGGAAGTGTGTAAATGTGATAAACAGGCAAAATCACAGAGCAACACTGCAGACAGACTGAAAGCATGCCTGGggtttttctctcattttggTGGGAAGTCCAGActtcctgttcttcttctttgGCTGCACGTTCTGGCTGGCTTGCATGTCTTTTTCATCCAAGAGCCTGGAAGAGTGAAACTCTCCGTCCTTGCGGATGAgctgttcaaaaacatttataagtcAACGAActgaatgcaaatgtatttcataACATATGAAGTTAATAAATTAAGAAGTATTTaaggaaataaatgtatttagtctCTAGAATTTAAGTATACatcactgttcaaaagtttagggtcagtaagacttttaaaaatatttttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU235328 lncRNA downstream 875 18194252 ~ 18194524 (-) True G158946
TU235329 lncRNA downstream 1842 18192970 ~ 18193557 (-) True G158947
TU235247 lncRNA downstream 151923 18041910 ~ 18043476 (-) True G158882
TU235259 lncRNA downstream 179522 18012126 ~ 18015877 (-) True G158892
TU235252 lncRNA downstream 193709 17999833 ~ 18001690 (-) True G158887
TU235340 lncRNA upstream 4398 18200767 ~ 18200966 (-) True G158949
TU235341 lncRNA upstream 6667 18203036 ~ 18203452 (-) True G158950
TU235343 lncRNA upstream 9774 18206143 ~ 18206458 (-) True G158952
TU235344 lncRNA upstream 41528 18237897 ~ 18238532 (-) True G158953
TU235346 lncRNA upstream 48554 18244923 ~ 18246827 (-) True G158955
XM_043224702.1 mRNA downstream 17909 18162460 ~ 18177490 (-) True lima1a
XM_043224711.1 mRNA downstream 71695 18120295 ~ 18123704 (-) True igfbp6b
XM_043224710.1 mRNA downstream 79073 18107885 ~ 18116326 (-) True pip4k2ca
XM_043225198.1 mRNA downstream 90279 18102311 ~ 18105120 (-) True gpr182
XM_043225144.1 mRNA downstream 124436 18065270 ~ 18070963 (-) True tspan31
XM_043224588.1 mRNA upstream 18209 18214578 ~ 18220380 (-) True copz1
XM_043224578.1 mRNA upstream 35404 18231773 ~ 18235536 (-) False hnrnpa1b
XM_043224577.1 mRNA upstream 36040 18232409 ~ 18235536 (-) True hnrnpa1b
XM_043225278.1 mRNA upstream 99677 18296046 ~ 18301717 (-) True hoxc1a
XM_043224321.1 mRNA upstream 118464 18314833 ~ 18316762 (-) True hoxc3a
TU235255 other downstream 147521 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 852014 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1015620 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1836694 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 1952004 16240810 ~ 16243395 (-) True tac3a
XR_006247822.1 other upstream 35274 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 551022 18747391 ~ 18754712 (-) True G159076

Expression Profile