RNA id: TU235346


Basic Information

Item Value
RNA id TU235346
length 1905
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G158955
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18244923 ~ 18246827 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaatagaatgtCAAGAAAAAGGTCAATATAAATGATCATTGCTAGATATATCAGTAATAATTttccaaatataaatgtattttattgtatactttataatatactttatataaatatgtgcaaatatgtataataaatgcattaaaaagttcTAACATTAAACACTGGTCACAAGCCGATCGTACTCAAATGCACCACAAATCTTAAtgaaagtattaaaatgaatatttatgatttagatGCCCAGATTTTTATAATTAGAATGTCCTTAAGGGATGTAATATTTCAACGACGAAACTCGTCGTGCGGTGctgtaaataatacatacaaAGTAATGCAATGATTTGCtcaaagctaatttaaaaaagcCCATGAATCAGTTCATAGAGCAATCCACACTGACATTTACTCTGCGCTCATTCAGCTCCCTGCCTCCAAAAGCTCCAGCACCAGAACGTGCCGTTCATAGAGAGCTTTGCTATTAAACGCAGCTCTAATAGGCTTTCTCGCCACACTGTATCTTCTTCCTCCTGCCGAGCATCTCCGGATAGCAAAGCTTGCGCTGTCTGTCGGCCCCTGCCCCACCCTATCTCAGCTTTTACCTCCGGCCTGTTAAAAATGATATCAGCTCGTGGAGGGCGAGCAttagcatttgcattttattggaGGCATGGAGATTTAGAGCAGTGGATACATCAGCTCTGAGCAGACAGAATTAGTTAACAATGCATTATCTGCCTTTTATGGCGGCCATAATTCTCTCACTACCCTGGCTAGGAGAAGAGATGGGGGTGGAGGAGGACTGGACGTAACGCCAGACTGCTCGCTCCACGGTGGGGGCTTCTGGGAGAGGCTGGGCTTTGTTTCTCGATGCTTTAACGCAAAGAGCATCGCTGCAGCATTTCGCTTCGCGATTTGAACAACAGCCCAATGGAGGGCCGATAAGCGTCTCCAAAGGTCACAGCTAACGACGTGACCTTGCGTTCTTAACGACGGCGCACATAATCATGCACTAAAATTCTGCAGAGTCGTGGTGTAATCACGCTCGCGCGTGCGTTTTGGCTTTTTAGGTTCGGAAAGGGACTGGGAGAGCGTCGCATATTGCGCTTACGGGGCCTACAGGAAGCCGATCGGTGATCCGAAGGAAGCGACGGCGCACGGGTGCACTTTGTGTGTGCGCTCCAGCGGTTTGGACGATGCTGCAGTGTGGATCGAACACACTGCTGCAGTCTTCCCCTCCCAAACTCCAGCCCTCCACCACAGCTGTTCAGTGGTCCCCTTGACAGCCATCAATTAGAGCTTATGCGCAGCAAAAACCCATCGGACCACATGCATCCCAGAAATCATGCACACAGACTCTATTCGCCACTCGCTGACTTTTTTTGCCTCAGCAAACATATTCAAAGCGTGCACTCTTTGCTTATTGGTAAAAACCTTGCTCAGGAAAGGCAAACCCCTACATGCTGCTCGTAGTTCAACATTGTGGGTTTCACCACTGGGATTATGACTTTGAAGGAATAGCTTGTCCAAAAGTTCAAAATCTGTGATGGTTTACACAACCTTACGTcattcaaaacctgtatgactaTCTTTGGTGAAATGGAAAGTTATTtcgaataaacaaataaagcaatacactcttaaaaataaaagttccaatagggttttttttgcagcagtgTCATAACCATTTAAAGATTTGTTTGCGTTTCTAAAGAACATTCTAATAATCAAAAGAATTCGTGGATGAGTTTTATTACTGTAGAAACACCATTTTTGGTTTCCCAGAGAATTTTAAATTGAacagttctttaaagaacctatTAGGGTAAAGgactttttgtaaattataaaggttctatggacataaaaaaGTACTTAATGGAACTATCATGGCCAAAagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235344 lncRNA downstream 6391 18237897 ~ 18238532 (-) True G158953
TU235343 lncRNA downstream 38465 18206143 ~ 18206458 (-) True G158952
TU235341 lncRNA downstream 41471 18203036 ~ 18203452 (-) True G158950
TU235340 lncRNA downstream 43957 18200767 ~ 18200966 (-) True G158949
TU235338 lncRNA downstream 48554 18195399 ~ 18196369 (-) True G158948
TU235357 lncRNA upstream 49417 18296244 ~ 18302575 (-) False hoxc1a
TU235355 lncRNA upstream 95534 18342361 ~ 18350347 (-) False hoxc6a
XR_006247816.1 lncRNA upstream 175032 18421859 ~ 18456506 (-) True LOC122328626
TU235396 lncRNA upstream 193823 18440650 ~ 18442479 (-) True G158984
TU235375 lncRNA upstream 312593 18559420 ~ 18563142 (-) False G158980
XM_043224578.1 mRNA downstream 9387 18231773 ~ 18235536 (-) False hnrnpa1b
XM_043224577.1 mRNA downstream 9387 18232409 ~ 18235536 (-) True hnrnpa1b
XM_043224588.1 mRNA downstream 24543 18214578 ~ 18220380 (-) True copz1
XM_043224702.1 mRNA downstream 67433 18162460 ~ 18177490 (-) True lima1a
XM_043224711.1 mRNA downstream 121219 18120295 ~ 18123704 (-) True igfbp6b
XM_043225278.1 mRNA upstream 49219 18296046 ~ 18301717 (-) True hoxc1a
XM_043224321.1 mRNA upstream 68006 18314833 ~ 18316762 (-) True hoxc3a
XM_043224329.1 mRNA upstream 69810 18316637 ~ 18330701 (-) True hoxc4a
XM_043224334.1 mRNA upstream 92222 18339049 ~ 18341234 (-) True hoxc5a
XM_043224333.1 mRNA upstream 95507 18342334 ~ 18345012 (-) True hoxc6a
XR_006247822.1 other downstream 9387 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 197045 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 901538 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1065144 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1886218 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 500564 18747391 ~ 18754712 (-) True G159076

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_02173311_02179118.mRNA True 3457 mRNA 0.40 5 CI01000001 2172770 ~ 2180987 (-)