RNA id: XM_043225278.1


Basic Information

Item Value
RNA id XM_043225278.1
length 1206
RNA type mRNA
GC content 0.53
exon number 2
gene id hoxc1a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18296046 ~ 18302575 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCGCGCTTGTGGATGGATTTCCAGTCGCGTCCATCCTCGGACGAAAATCTGGAATATATGAGATGCGGTCATGAGTTCTTATCGAGGGTTCAGGGACCCGACGTCGCTGTTCGTCGAGGGCTATCGTGCTACCGGAGTAATGCGTCTGCATCAGGACCACGGAGCTACAGCTGACTTCCCAGACAGAGAGGAGGGACATGTCAACACCGAGGCGGATTTTCTTCGGTATCACTTCACGAATCTCAGTGCCACGGCCACAGGCGCGTGTTCAAAGCCCTGTGAGGACCCTGGCCGTGCTAACTCGACCAGACCCCCCTTCCCCCATAATCAAGATCTCTATAGAGCAGTGCACCCCATCCGACCCCAAGTCCCCTCCTTCCAAAGCTGTCGTGTGCAGGGTCTCTCCAGAACGGGCTTCTCGCCCTCCTCAGACACTTTAAGAACTTTCTCCGGCGCGCATTGCGAGCTCGGCCCTGTCAACAACGCGCACCTCGACGCGCGCACATGCGACGGCCCAGCGCTTCACCCTGCGGTCGGGgaaacacacaccagacacGAGGCTCTCAACACGTTCAACGAGACACTGCAAAGCGGAAAGACATTCGATTGGATGAGAGTGAGGAGAAATCAGCCCCGTACAGCTAAGTTGCATCTGGACCCGGAGCTGAAGACGGAGCGCGGCCGAGATCCCGAGGAGGACGCTTCGACCGGAGCAACGCGAACAAATTTTACAACCAAGCAACTCACAGAACTGGAAAAGGAGTTTCATTTCAACAGATATCTGACTCGAGCCAGACGGACGGAGATCGCCAGCGGTCTCCAGCTGAGCGACACGCAGGTGAAGATCTGGTTTCAGAACAGGCGCATGAAACAGAAGAAAATGCTGCGGGAAGGCCTGCTCCAGGACTGATGCTGGCTTCTGGCTTTGATGAGGACTCCCCAAAAAAACTGACACTTGTTCATCTCCTGACGAAACATCATTTCTAATTGGGTAAGGCTGTGGGGACGGCTGCCAAAGGCTGCACTACAAACCTGAACGCTCACGTGAACGcgtcaaaaacatttatttgtcgattcaaccttttaaataaataaagcagtaacTCGCTGTGGTTAAATATCGAGTTTACTCACCTGTTGAAGCGAGCGGAGGAAACTTGATTTAACCGAAACGCACTTCATGGGTGTTTCTTGCTTTAAAATGT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09301 HOX_1; homeobox protein HoxA/B/D1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235346 lncRNA downstream 49219 18244923 ~ 18246827 (-) True G158955
TU235344 lncRNA downstream 57514 18237897 ~ 18238532 (-) True G158953
TU235343 lncRNA downstream 89588 18206143 ~ 18206458 (-) True G158952
TU235341 lncRNA downstream 92594 18203036 ~ 18203452 (-) True G158950
TU235340 lncRNA downstream 95080 18200767 ~ 18200966 (-) True G158949
TU235355 lncRNA upstream 40644 18342361 ~ 18350347 (-) False hoxc6a
XR_006247816.1 lncRNA upstream 120142 18421859 ~ 18456506 (-) True LOC122328626
TU235396 lncRNA upstream 138933 18440650 ~ 18442479 (-) True G158984
TU235375 lncRNA upstream 257703 18559420 ~ 18563142 (-) False G158980
TU235376 lncRNA upstream 257703 18559420 ~ 18563142 (-) True G158980
XM_043224578.1 mRNA downstream 60510 18231773 ~ 18235536 (-) False hnrnpa1b
XM_043224577.1 mRNA downstream 60510 18232409 ~ 18235536 (-) True hnrnpa1b
XM_043224588.1 mRNA downstream 75666 18214578 ~ 18220380 (-) True copz1
XM_043224702.1 mRNA downstream 118556 18162460 ~ 18177490 (-) True lima1a
XM_043224711.1 mRNA downstream 172342 18120295 ~ 18123704 (-) True igfbp6b
XM_043224321.1 mRNA upstream 13116 18314833 ~ 18316762 (-) True hoxc3a
XM_043224329.1 mRNA upstream 14920 18316637 ~ 18330701 (-) True hoxc4a
XM_043224334.1 mRNA upstream 37332 18339049 ~ 18341234 (-) True hoxc5a
XM_043224333.1 mRNA upstream 40617 18342334 ~ 18345012 (-) True hoxc6a
XM_043224332.1 mRNA upstream 53944 18355661 ~ 18358381 (-) True hoxc8a
XR_006247822.1 other downstream 60510 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 248168 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 952661 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1116267 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1937341 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 445674 18747391 ~ 18754712 (-) True G159076

Expression Profile