RNA id: TU235376


Basic Information

Item Value
RNA id TU235376
length 2621
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G158980
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18559420 ~ 18563142 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCAGTtgatagtcatttatttaaattgtgtgGTGCATTTTGTGAGTGTTGAAACACAAGAAACGTAACAGTCATGTGAAGAGGGGATTTTGCACGATAATCTCAAGTAATGCAATGCATCAACCATGCTGAAATACTATGTCTTTATTAGCTAAAATGTAATCCATTTGGAAGTCATATTACAGATATTAAAGGATTTAATGTTACAAAGTAGTGAAAATGGCATGTCTAGTGATTTCAAAGCTATAAGAAACAAGTGTATTTGGGTGAATTGGGACTTGTAAACCCCTAATCAACTTAATTTGTTATTCtagataaaatgttaaaaccctatttatttattcaataaataacattttggacagttaacatttttttttataagaccTTTCCAATTTTGAGGTAATACATTACTATATGAGGGTTATAGCTAAAACCATGAAATGTTTCTGTTAACGTTCAGAATTTAAAAGTTTACAAAAACACTAATGTGcacacatgcataaaaatatgggACATGTACATTTGCACAATCTGGTTTGAACATTCTCTTGCATACTGTTATGTCTAgtacaggaagaaaaaaaggcaaaagagCCATCACAAATTCACAGTACAACAGTTAGTAAGCCAAAACAtaatttccccctttttttctttttccattaaataaatagttgtatttttaaatttgtgattAAAAACTCACATAAACTTGTGGAGACCATCTCTATAGGGATGTTTTAGCTTAATAAAATTAAGCATGTTACATCTTCATAGACCTCATTTTCTAATTAGAACATTCTCATCACaacttttttcttgtctttttgttGTATTACACTATTGTAGAATACTCACAATTTCACTGTGTTTTGTAgcaactatatattttaattgttcagCCATGTTGCTCCTTGTCATGCAGGAGAGACTTTAAGACATTTTGCATACAGCATCTGAGATTATGATGCATGACACTACCTGTTGTTAAAACATAAGTGCACTGGTGGATTTTGTTTTAgccactgaaaagaaaaaaacaggattGACCCATTTCATAATGTCATAACTATTTGTTTATTCTCCAAAGATGAACATTACATGCCAAGTGACATGTTCTGCTCTATAGGATATGTGACGTGATTGTGAACGTACGTAACAATTAGCCCTTAAAGATGATTCAGTTTCACCTGCATTAGACTTCAGCAGAACTGTTAAATGCAGCAGTACCTTccacaaacaaagcaaatgtgCACAAATGCTTTATTCAATAATGTTCAGGTACTGAGACACACTGATCATTTGGGAGCACTCGGCCCAATTACAGATGGCAACCAACTTTAGAGTAGCTCAGAAGGGCTGGTCTGAAACTGGATAACGCAACAACAGAGCCGTTAATGGAGCGCAGTGCATCCTCACAGCTCCCCACGGTAGTTTCTTTCACCTGGATGGTTTTGGCTGGAAAACGGTGTGTGAAATAATACCCACAGTGATTTTACAAGGGAAAAAATAATTCTctcttttaagaaaaaatgcaGGAAATAAGGTGGCAGCTTACCTTAGCCATTGTCATCTCAAGATAGGATGTGAACGAAAAGGATTGCCAAACCGATGTTCAGGAATATAACCATGCAGATCATAATCGTGTTTGGCCCCTAATTAGTTCCAGAGGCTCCTGTCTTGTTTCGCTAGGGGCTTTCACAATAGACCTCTGCCTCATTTCAGTTTTGGCCTCGACCTTGGCAACTGGTTTAGCAACCGGCTTGACCACAGGTTTAGGTTCTGGTTTAGGCACTGACTTGGGCTCAGGCTTTGGTGCAGCTTTTGGGGCAGGGCTTGGTTCTCTTTTTGGTGAGGGTTTAGGCTCAATTCTGTTAGTTAGTTTCTTCTCCTCCCTGACTTCTGTCCTAGACTCAGGTTTGCTTTCTGTCTTCGAAGCTGGGCGCTCATTTACAGGCTCCCTTATTTCAGCTCTGTGCTTGACCTCAGCTGCCTTTGGCTCTGGTGTGACGGCTTTGGGGGACAGCCTGGGGGCAGGGCGAGGAGGTGGTTCATCTTCGTCGGTGGTGAGGACGAGGTTGGTTCTTACTGGCGTAACAGCAGGAGCAGGTTCTGCTGCTCTTGACTCCAAATCCATTTTCTGCAGGGCTTTGATTTCCAGGTCAGATCCCTGCTCGGCTTTGGCACTTTGGCGGCTAGGGGTACGGGATGGCACCTTGCTGCTGGGAGCAGAACGCTCCTCTGGAACAGCATCTGAAGCGGGAGCAACGGCAGGAGTGGAAGACGGGGTGGTGGGTCGACTACTTGGCCTACTACCTGCTCGACTGCTACCTCTGCTACCACTGCCCCGACTGGCCTTGTCTCCGTTCCAGCTGCCAGGGCTCAAGAGGTTTGGATCTTCCTTGCTGGGTGTCTGGGGGACGATGACTGCAGTGGGTGAGGGAGTACGTGCAATGGTGGAGCTTGGTCTAAGACTTTCCATCTCGTGCATGAAGGGGCTCTCCGGGGGTGTTGGTAGGGAATCCTCGGCTAATAAGGGCTCGTGCATCCCTGTATCTGCATTCTCATTTCTCTCAGCAACCTCCTGCAAGGCTCGCTTTTTCATATACTCCGGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247816.1 lncRNA downstream 102914 18421859 ~ 18456506 (-) True LOC122328626
TU235396 lncRNA downstream 116941 18440650 ~ 18442479 (-) True G158984
TU235355 lncRNA downstream 209073 18342361 ~ 18350347 (-) False hoxc6a
TU235357 lncRNA downstream 256845 18296244 ~ 18302575 (-) False hoxc1a
TU235346 lncRNA downstream 312593 18244923 ~ 18246827 (-) True G158955
XR_006247881.1 lncRNA upstream 50534 18613676 ~ 18615145 (-) True LOC122329081
TU235489 lncRNA upstream 79120 18642262 ~ 18644584 (-) False G159048
TU235490 lncRNA upstream 79120 18642262 ~ 18644688 (-) True G159048
TU235492 lncRNA upstream 79120 18642262 ~ 18644074 (-) False G159048
TU235500 lncRNA upstream 84945 18648087 ~ 18648625 (-) True G159052
XM_043225347.1 mRNA downstream 13927 18535712 ~ 18545493 (-) True gdap1l1
XM_043225346.1 mRNA downstream 13928 18535712 ~ 18545492 (-) False gdap1l1
XM_043224736.1 mRNA downstream 51679 18456925 ~ 18507741 (-) False rarga
XM_043224737.1 mRNA downstream 52015 18456925 ~ 18507405 (-) False rarga
XM_043224738.1 mRNA downstream 80961 18456925 ~ 18478459 (-) True rarga
XM_043224453.1 mRNA upstream 920 18564062 ~ 18570774 (-) False LOC122328645
XM_043224452.1 mRNA upstream 920 18564062 ~ 18567287 (-) True LOC122328645
XM_043224450.1 mRNA upstream 5030 18568172 ~ 18570838 (-) True LOC122328643
XM_043224448.1 mRNA upstream 15950 18579092 ~ 18584032 (-) True pmelb
XM_043224447.1 mRNA upstream 21982 18585124 ~ 18592854 (-) False ccnt1
XR_006247822.1 other downstream 323884 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 511542 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1216035 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1379641 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2200715 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 184249 18747391 ~ 18754712 (-) True G159076

Expression Profile