RNA id: TU235396


Basic Information

Item Value
RNA id TU235396
length 418
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G158984
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18440650 ~ 18442479 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCTGCTTCTTCTTCATCTCCTCTACTTTCTCTCTATATTCTCTCACTTCCTCCTTCAGCTCGCTGATCTTCCTTTCCAGGTCCTTGCGGCTCTGCTCCCAGGAGCTTCTGTCTCGCTCTCTCCTGCCTTTCTCCCTCTCCACGTTCTGGTCTGCTGCTTCCAGAGCCTGGAGCAGCTCAGCACGCTCCTTCAAACACTCCTGGAGACGACTCTCAACATATCCTCGCCCACTTCCTCGCCCTGACCCTCCTCCTCCAGAGTCACCAGCTCCTCGAGGGGCTTTGGGGCGGAGAAGGTAAAAGCAGTGCTGCGAGAACAAACCTCTCCCCTTCCATCCACATACACAAACTGATACTGTTGGGCACTAGGCCCTGGCAGGTAGGAAGCTGAGGGGAAAGAAGAGGGCAACTTTAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235355 lncRNA downstream 90303 18342361 ~ 18350347 (-) False hoxc6a
TU235357 lncRNA downstream 138075 18296244 ~ 18302575 (-) False hoxc1a
TU235346 lncRNA downstream 193823 18244923 ~ 18246827 (-) True G158955
TU235344 lncRNA downstream 202118 18237897 ~ 18238532 (-) True G158953
TU235343 lncRNA downstream 234192 18206143 ~ 18206458 (-) True G158952
TU235375 lncRNA upstream 116941 18559420 ~ 18563142 (-) False G158980
TU235376 lncRNA upstream 116941 18559420 ~ 18563142 (-) True G158980
XR_006247881.1 lncRNA upstream 171197 18613676 ~ 18615145 (-) True LOC122329081
TU235489 lncRNA upstream 199783 18642262 ~ 18644584 (-) False G159048
TU235490 lncRNA upstream 199783 18642262 ~ 18644688 (-) True G159048
XM_043225280.1 mRNA downstream 36894 18400997 ~ 18403756 (-) True hoxc13a
XM_043225305.1 mRNA downstream 47131 18391950 ~ 18393519 (-) False hoxc12a
XM_043225306.1 mRNA downstream 47131 18391950 ~ 18393519 (-) True hoxc12a
XM_043224261.1 mRNA downstream 57720 18379954 ~ 18382930 (-) True hoxc11a
XM_043224331.1 mRNA downstream 74410 18361054 ~ 18366240 (-) True hoxc9a
XM_043224736.1 mRNA upstream 14446 18456925 ~ 18507741 (-) False rarga
XM_043224737.1 mRNA upstream 14446 18456925 ~ 18507405 (-) False rarga
XM_043224738.1 mRNA upstream 14446 18456925 ~ 18478459 (-) True rarga
XM_043225347.1 mRNA upstream 93233 18535712 ~ 18545493 (-) True gdap1l1
XM_043225346.1 mRNA upstream 93233 18535712 ~ 18545492 (-) False gdap1l1
XR_006247822.1 other downstream 205114 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 392772 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1097265 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1260871 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2081945 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 304912 18747391 ~ 18754712 (-) True G159076

Expression Profile