RNA id: XM_043224047.1


Basic Information

Item Value
RNA id XM_043224047.1
length 2130
RNA type mRNA
GC content 0.48
exon number 1
gene id fam43b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17834843 ~ 17836972 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TgcaagaggaggaggaagagaaaggAGGAGCGAGCAGAGCAGCTGAGCCTTTCTGCTTTCAGTCTCCCGTCAGCGAGTGCCAGAGCAGTTTCCTTTGCTGTGcttctctgaaaacacacacgcaccacAACACTCTTCATCGCTGGTTGGGGGAGAGCGCTGTATCCTTTCCTCTCAGCCTGGATCATGCTGCCCTGGAAAAGGAGCAAGTTTGTGCTGGTGGAGAATGAGTCCAAAAGCAAGCCGAAAAGTCTTGGAGCCGGACTGACTTATCATTCCCTGCTTTCGACTTTGCTCCACTCCTGTCCGGACCTCGTTCCCGACTGCCCGTTTCACTGGCTGGGAAGCGTTTTCCACAGCAAACGCCAGAAAGTGGAGCTCAACAAAGAGGAACCCACTTACAACGTGCGTTACCTGGGTAGCGCGGTGACCATCATGGCCAAGGGCGAAGATTGCACGCAGGAGGCGGTGGCTAAGATCTGGACTCGCAGCAACTACGGCGAACAGAGCGCCAAGATGAAGCTCTCAATCGGGCCGCACGGCATCCGCATGGGGGTGGATAAAGGTGGCAAAAAGAAGCCCACCCACCTCTATTCCCTCAACCGTATTACATACTGCACCGCTGACCCCTTCCGGCCAAAGATCTTTGCGTGGGTTTACAGGCATCAGGTGAAGAATAAAGCGGTGGTACTAAGGTGCCACGCCGTCCTGTTGGCAAAGGCGGAAAAGGCCCGAGCTTTAGCTCTCAGTTTGTACCAAAACTCAACGTCTGCGTTTACGGAGTTCAAGCGACTAAAGCGGCAATCTGACTTCCGCCATTGCCAGCAACAGCTCTTGGGCGAAGACATTGTGCCTCTTATGCCTCTTCGGAGACTGCTGAACGGTCAGTGCCACTATCAGCCACCTGCAGAAAAGCCTGGAAGTGCCACACGGCTGTCCTCGATtactgaggaagaggaggaggatgaggatgggCCGAGGGTTGCCAGATCCCCCAACATGACAAACGCCAGCACTCCCAAtcctccttctcctccagaGAAAGACTTGGGAAAGATCGTAAATAGACTGGATGAGGTTTCGATTACCAGCTGGGATGAAGCACAGATGACTATCAGCACTCTGGTGTGATGTCAGATGGACACAGTTTAGTGTCCTCACCACTGAGCCTCTGTCCTGTCTCCTTTCCCGCCAAAACCCACTCTGTCTGGTACGTCCATCGATGCACCGTGAAACAGCCCTCCGAAACTTGGGATAAGGACCGTTGGCAGCCACGATGCCGATAAGGAAGTGTTACACGAGCTGCATGGAGAGGAAGAGCCAGAAGAAGCACAATATAAGGAAGACCGCAGGTACACCAATCATCTGGAATTGGTTGAGAGCTTACACCGAAAAGCCTTTATCTACCCCCGACATCAAGCAAAGCTTAAACCGAACACCCAAAGACGataaagcattcattttgtACTCATGGCACCGAATGATTTTGTGAGCATGTGCCAAGTGTTTCAGACTGATGGACTATGAGAAGGAACCTTAAaatgtgacttcttgtatgaCCAGATGGTTCATAACTGTCCCCCGATGACCTCTTTCAACTGGCTCAGCTTCAGTGGGATGCGGTTAAAGCCGGTTTATTGGCATTGGGAGCAGCACTAATGAATTAAACCATAACTTAGGAATCGAGCCATTGACTTGACATGTTTACTGCTACCATTCGTCATAGCTCTGGCTAATGAGTAATACATAACAAGTGAAGGCATCACCTGTGACGTTTGAGATGAGCCTTTTAAAACGTTTATAAAAGGTATCTGTTTTACACTGTGATTTGTCTGGGACCAAATGGCAGCAATGTATCTTGTATTTATACAAATTGTAATTCATTCTGAATATGTGCTGGTGTAATGTGGTAGTCATTTTTATGCCGTTCACGTGAAGGTCATAGCTCCCATCTGTCAACTCTggcatgtgtttttgtaatttcagCTCATCGTATTAATCTTCTAGAAACTGATTGAGGAAAATGGCGATTTTTCTActactttcttctttttctgcaCAATGAGACACTGTCAGTGTGAAAAATTGCCAAATGTTGTATAATAAATTGTTTGCttatattaattatga

Function

GO:

id name namespace
GO:0001944 vasculature development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235009 lncRNA downstream 86341 17746530 ~ 17748502 (-) True G158706
TU234910 lncRNA downstream 412538 17413703 ~ 17422305 (-) False coq10a
TU234925 lncRNA downstream 439421 17394021 ~ 17395422 (-) True G158632
TU234920 lncRNA downstream 448289 17383342 ~ 17386554 (-) True G158628
TU234897 lncRNA downstream 499598 17333844 ~ 17335245 (-) True G158608
TU235093 lncRNA upstream 106953 17943925 ~ 17944160 (-) True G158774
TU235252 lncRNA upstream 162861 17999833 ~ 18001690 (-) True G158887
TU235259 lncRNA upstream 175154 18012126 ~ 18015877 (-) True G158892
TU235247 lncRNA upstream 204938 18041910 ~ 18043476 (-) True G158882
TU235329 lncRNA upstream 355998 18192970 ~ 18193557 (-) True G158947
XM_043224106.1 mRNA downstream 38413 17788980 ~ 17796430 (-) True LOC122328416
XM_043224107.1 mRNA downstream 45913 17787597 ~ 17788930 (-) True LOC122328417
XM_043224320.1 mRNA downstream 48601 17784715 ~ 17786242 (-) True LOC122328575
XM_043225105.1 mRNA downstream 50719 17778474 ~ 17784124 (-) True pink1
XM_043225104.1 mRNA downstream 56923 17773405 ~ 17777920 (-) True LOC122328974
XM_043224158.1 mRNA upstream 42095 17879067 ~ 17914537 (-) True vwa5b1
XM_043225388.1 mRNA upstream 85615 17922587 ~ 17924503 (-) True ubxn10
XM_043225389.1 mRNA upstream 87667 17924639 ~ 17926204 (-) True LOC122329192
XM_043225425.1 mRNA upstream 98602 17935574 ~ 17937579 (-) True LOC122329235
XM_043225426.1 mRNA upstream 98602 17935574 ~ 17937577 (-) False LOC122329235
TU234899 other downstream 491458 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 655064 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1476138 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 1591448 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 1665009 16143833 ~ 16169834 (-) True G158288
TU235255 other upstream 208966 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 394671 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 910419 18747391 ~ 18754712 (-) True G159076

Expression Profile