RNA id: XM_043224059.1


Basic Information

Item Value
RNA id XM_043224059.1
length 2752
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC122328386
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15957896 ~ 15964419 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAGTCTGGTGTTGTTTTCTTCAGAGCCTGGGCCAGGCTAGAGTGGTTTGGTGCGGAAAGTCCTGTGGCTTcacaaacaacataaaaagcTGCAGCTTTTGGATACTGCCTAAACCCAGGTATTGACACTGAAGCCCTCTTGAGATGGCGTCCTCTTACCCCCTGAGACCCCAGAACAGAAGTCAACAGGATCAAGCAGGGATCTTGAGACATCAGGAGTTGAAGACAAAAAGTGCTTCCTTTAAAAGAGGATCTGAAAATGTTGACCCATGTGCTTCTGCTGAAACTGAAAAAGGAGTCGGTAAACTCAAAGGTGTCAGCAGGCTTCCCGTCCTCGCCAAATCTCTGCAACCAGCCCTAAGTGAGCTCTCCCAAAATCCCAGTCACAACAGCTGGGAACAGAGGCCTCTAACAagtaaagctcaaaaaaaaagaacctgcACCAAACCTGTTCCTTTCAATTTGTCCCAGTCACGTACACGCAATCAGAGAAACACGGGTGATCACGAGGGAAAAGCACCTCTGGTGCCTTCTACCCGATTAACACCAGGGACAAAAGTGATGAACTTGAAGCCAAGTGCCAAAACTGTAACTCCAAACCATAAAGCTACGACATCAGGTGTCCTCAGGGCTCAAACCAACAAATCACAGCGACTGCAGTCAGGTGGTCATGTAGGATACATGGCATCATATAAAGACTCCACTGATGTTCACCCACCATCACATGAATCTGGATGCTGTAGCCACACCGATTTAAGTTCACGTTTAGGTAGCATCACTCTTACGCAATCTAAGCTTCCTGAAGACTCTGGTATGAGTCATTTATGTAAAACTTCACTCATTAAAGTAGATATTAATTCTGATAATCAAGCACCAAAGGACAAGCACTGTTTTCCATCAACAATACAAAGGCATGTAAGCACTGAAGAATCAGCTGTGCACGGTGTCCTCCCACGGTGTGAGGGATCAAGTGCTGTTGGAGCACAATGCGTGATGCCACGTTTATCTACCTGCCCTCCTGGACCAGAAACCTCCATTAATATGCCTCAAAGAGTTGTGAAGAAGAGTCACGGCTTTGATGTCACCACAGACAAGGCTGGGCTGTTTTCCCCTGACCCTTCAGCGCTACGTAGTATTCTACAGAGTGATGGACCTGGAGGAAGACTGGGGGAGCATGTTGGAGCAACACCCAGAGCATCAACCTGTCCTACTGGCAGAGGAACCTCTATTTATTCTGCTCAAAGAGTGCCTGccaaaaaatctcaaaaacaaGCTCCAGCAGAGGCTAAAAGCCCTACAgGAGGGGCCTTCTCTCCTGATGCATCAACCGGCCTTACAGGCAGAGCAACTTCTGTTTACTCAGCTCAAAGAGTGCCAATTAGGAAGCTTAAAACAGACGAATCAGCTGCTGTCAAAGCTCCTGCAGTCCAAAAACATCCTTTAGGTAGTGCTGTGTCCTTCTCCCCTGACCCTGCGGCCCTGCGCAGTATTCTACTGAATGAAGGTGTGACGGCTGGTGGAGCAACACCCAGAGTTTCCACCTGTCCCAGCGGCAGAGGAACCTCCATTTATTCTGCCCAGAGAGTCCCAGTGAAGAAGAATAAGCCTGAAGCCATAGCAGCAGCAACATCATCTCAGTGTGCAATCAGAACACCAGTGATGAAGTGGACACCACAGCGGGTCGCAAAAACCAAACCACAGTCAATGAGGAAGCTTTGTACTACCCAAAAGATGTCCAGTTTAAGGGGTTCCCCGGGTTTGCGTGAATCTCACCACCCCAGCACTGGACGTTTGGTGTGTCAGGAGGGGGAGGGTGTGATTCAAAGGTTATTTGAGGACCAAGAGCAGATGGACGATGACCAAATAGGCCAAGATGATGTAACTTCAAAACAGTCACTGAACAGCCACCAAACTACTGAAGCACAGTCAACAGTTAAAGAAAATTCGGAATCAAATCATTGTCACATCGAGAACGAAGGCAAGAAAACGGTCCAGCCTTTCATACAAGCAGCACACAGAGGGTCAGTCATTGTTTTCTCATCAAGCCAAAGACTTGGATCAGAGAGGTCTCAGGATACTCTGAAGACTCCTGGGATAAGTGTCCCTCTGCAGCTCTGTTTAGACCAGCTTACTTCCCATAATGCACTACCACTGCAGTCAGACCAAAGTAATGGATCACAGATCAATCCCAGTTTAGACCTGCCTAAACAAAGCCAATCTAAAGCTGCTACTGTCAAGCAGTCTAGCACTGTATCGGCTCTGTGGAGGCGTCATACTCCTCTAGAGGAGATGTTTCTGGATGAGGAATGTGCTATGTACACCTCTCGTCTGCTGTCCTGCCCGCCGCAGCCCCGCTGTGGAAACCCGGTGGCCACCACACTTCTGTTTCAAGACTCTACTTGTTTTTTACCAATTGGCCTGTCTTCTCCTATACGTCTGAGTGCTGTTCCTTCAGGTTCCTCTATCAGAGCATGAAGGCAGATGTCCCACAAGACTTTGCACATGTCAGTCTGTGTATATAAGACTGTCTGAAACAGTATTTCTAGTTGCACTTTTGATATGAAATGTCATCCAGTCAGCAAAGTATTGGACAGACACTATATTTGGTGGGATTCACTGTTGACAACATGGCTGAATGCAAAATACTGAACactttcataatttttataCTGCAATTGTTACTGACCTGAACAACTGTGCTTTCCACTTGCCTCTTGtataaactgtataataaatctatatataaacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234328 lncRNA downstream 144969 15812281 ~ 15812927 (-) True G158208
TU234308 lncRNA downstream 168565 15728154 ~ 15789331 (-) True G158198
XR_006247888.1 lncRNA downstream 240652 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA downstream 240652 15699771 ~ 15717244 (-) False LOC122329227
TU234287 lncRNA downstream 276024 15680886 ~ 15681872 (-) True G158188
TU234357 lncRNA upstream 349 15964753 ~ 15965763 (-) True G158227
TU234368 lncRNA upstream 43702 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 137221 16101625 ~ 16102214 (-) True G158282
TU234428 lncRNA upstream 153477 16117881 ~ 16118214 (-) True G158284
TU234492 lncRNA upstream 282612 16247016 ~ 16247293 (-) True G158333
XM_043225558.1 mRNA downstream 498 15949082 ~ 15957398 (-) False pfkma
XM_043225557.1 mRNA downstream 499 15949082 ~ 15957397 (-) True pfkma
XM_043224740.1 mRNA downstream 9833 15935353 ~ 15948063 (-) False LOC122328789
XM_043224741.1 mRNA downstream 9834 15935353 ~ 15948062 (-) False LOC122328789
XM_043224739.1 mRNA downstream 9834 15935353 ~ 15948062 (-) True LOC122328789
XM_043224950.1 mRNA upstream 2017 15966421 ~ 15975709 (-) False phf8
XM_043224948.1 mRNA upstream 2017 15966421 ~ 15975709 (-) False phf8
XM_043224949.1 mRNA upstream 2017 15966421 ~ 15975709 (-) True phf8
XM_043224109.1 mRNA upstream 14212 15978616 ~ 15983169 (-) True arf3a
XM_043224108.1 mRNA upstream 14212 15978616 ~ 15982975 (-) False arf3a
TU234273 other downstream 240646 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 240646 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 483519 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1368303 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1627112 14326966 ~ 14330784 (-) True G157909
TU234366 other upstream 43702 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 179429 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 276406 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 393248 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1212248 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile