RNA id: XM_043224313.1


Basic Information

Item Value
RNA id XM_043224313.1
length 1697
RNA type mRNA
GC content 0.36
exon number 3
gene id LOC122328567
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15195117 ~ 15197461 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtaatctaatgtattttttttaggttttctcCTATGAGGTGAAGAGTAATCTAATATAAAAGAATCCAAGatgatataaaaatgtgaagaaaaagaaaatattcaatTTGTTGTTACATGATGTGCATTAACAATACATTACATCATGACTACCCAAAATGAAGTTTGTTAAAGCTGCAGGGGGTTTATtgtaaagcaaataaataatctttaaaatgtcttaaatgaatcattttaaaattacatcaTGTTTACCTTTATGTCATGCGACTACTAACCGATGGCGTATAATCGTGAACATGCAAAAGTAATACTTCATTATTGACttattactttaaaatctatttatattatgtgaaagtttatatatatatattactattcatttattaatcagAATCTTTTACGCTGGACTTGGAGGGTAAGTCTTCCATCTAGTGGTTGTTTAGTTAAATGACAGTATTTGTCCTTAAAATTACAATCTTTCTACTTTTcacccacacacatatatatatatattattaaacactTATTAATCCAAATCTTGTACAAAAGGTACCAGGAATGTACGTGCGTCATCTAGTGGCTTTTTGGTAAATTTATGGTCTTTGACCTTTTACTGTATTGCAAAATAATGTGAATGTAACCTGTTGTAACAATTTCCTTTATACACATAACTGTCCAAACTCACCAAAAAAGGTTAGATACTCTGTATTATAATTCTTATTTGAAGGTTTTTGTATGAAGAGTGTAAAGACTGTTTGTGTTCACGTGTACATACAATATGTCAGTATATTGAGAGACCCTACAATGCCGTTTGAAAACCACAGTTTAGCCATGACTGCTTTACATCCTGTTTCACTGTAAATAGCTCACAACAAGGTGCTTCAACACGTAACATAGCTTTCACTCTCTCATGAACAATATGAAGAGCCTGTATATACTGCTTTTAGCACAGAtaAGTGTGCAGCTTAAGTGCGACAACACAAGGATTCAAGCCACAATTGGAAGCACTTTGACAATTACCTGCACCTATAAAGCAAACCAGTATCGATTCAGCAAAAAGTACTGGTGTGCTGGAGACTCCAGATCCTCATGTGAAGTTCTGATGGACACAGATGGATTCACACACGCTGTGTACAGAACACGGGCTCAAATCATTGATGGAGCTTCTAGAGGCCTGACGGTATATATAAGAGATCTAAAGTTAGATGACAGTGGAACTTACTGGGTTGCGATTGACAAAATTTATACTGATCTTATGATCAGGATCCAGGTCACCGTAACAAAAGAGGCTGTAATAAAACCAAATGTTTGGCCTCTCAGCTCCCCCGAGATGACTTGCTGGGGTCAACCATCTGTGTTTCGCTGTAGGAGTGAGAGAGGAGCGGATGTGCAGTACACTTGGTACAGAGTTGGACACCCAAACAACATTGTTCTGCACCATTCCTCTGATCTCTATCTCCATTGTTCAAACATCACTGAAGACAGTCAGCTTTTCTGCTCAGCCTTTAATGACGTCAGCAGCCAGAGAAGCGAATTTGTTTCTCTGCATCTACTTCAGTCTGCAGAAAAGGACTGTGTTTATCGCATCTCATCGAGCGGTGAGATTTACCTGTACAttaagtttttttctatttgcattCTGGGTTCCTTGCTTCTGACTGGTCAGTCGTGCAATGCAGTGGTCAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247855.1 lncRNA downstream 5479 15188148 ~ 15189638 (-) True LOC122328921
TU234018 lncRNA downstream 146830 15047173 ~ 15048287 (-) False LOC122328913
TU234007 lncRNA downstream 349439 14836361 ~ 14845678 (-) True G157999
XR_006247854.1 lncRNA downstream 364268 14830264 ~ 14830849 (-) True LOC122328920
TU233965 lncRNA downstream 493005 14684890 ~ 14702112 (-) False LOC122328902
TU234028 lncRNA upstream 4905 15202366 ~ 15203950 (-) True G158014
TU233990 lncRNA upstream 12767 15210228 ~ 15338843 (-) True G157984
TU234037 lncRNA upstream 98427 15295888 ~ 15296636 (-) True G158019
TU234059 lncRNA upstream 279026 15476487 ~ 15477769 (-) True G158024
TU234264 lncRNA upstream 406387 15603848 ~ 15607080 (-) True G158174
XM_043224970.1 mRNA downstream 7210 14685791 ~ 15187907 (-) False LOC122328902
XM_043224976.1 mRNA downstream 9955 14685791 ~ 15185162 (-) False LOC122328902
XM_043224971.1 mRNA downstream 9960 14685791 ~ 15185157 (-) False LOC122328902
XM_043224969.1 mRNA downstream 9962 14685791 ~ 15185155 (-) False LOC122328902
XM_043224973.1 mRNA downstream 9963 14685791 ~ 15185154 (-) False LOC122328902
XM_043224995.1 mRNA upstream 119266 15316727 ~ 15324022 (-) False LOC122328911
XM_043224993.1 mRNA upstream 119266 15316727 ~ 15324022 (-) True LOC122328911
XM_043224966.1 mRNA upstream 141598 15339059 ~ 15347198 (-) True LOC122328900
XM_043224960.1 mRNA upstream 149956 15347417 ~ 15474377 (-) True magi3a
XM_043224961.1 mRNA upstream 149956 15347417 ~ 15474376 (-) False magi3a
TU233895 other downstream 605524 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 864333 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 1912790 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1977709 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 3270467 11922844 ~ 11924650 (-) True G156985
XR_006247853.1 other upstream 149956 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 501808 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 501808 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 810645 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 946372 16143833 ~ 16169834 (-) True G158288

Expression Profile