RNA id: XM_043224320.1


Basic Information

Item Value
RNA id XM_043224320.1
length 462
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC122328575
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17784715 ~ 17786242 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAATCGCTATAACCCGAAAGAGCTCGTTCGGAAATCTCAGGAAGCCAAAGAACAGGCGTATTGCCCCTACAGCAAGTTCAGAGTTGGAGCAGCTGTCTTAACAAGCGATGGAAAAGTGTTCACAGTCTACAGTACTGTTTTCTTAACAGGTTGTAACGTAGAGAACGCCAGCTATCCTCTTGGACTGTGTGCTGAGAGGACTGCCATCTCTAAAGCTGTGTCTGAGGGATACACCGGCTTCAAAGCCATCGCAATTGCCAGCGACCTCAAGGATAGCTTTATTTCTCCATGTGGAGCCTGCAGGCAGTTCATGAGAGAGTTCGGCTCACAGTGGGAAGTTTATATGTCAAAATCTGATGGATCTCACGAGCTGATGACAGTGGAGGAGCTCCTGCCGCGTTCATTTGGCCCTGATGACCTGAAAATCGGAAAAGACCCTGTTGGCAATtcgaaaatgtaa

Function

GO:

id name namespace
GO:0009972 cytidine deamination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG:

id description
K01489 cdd, CDA; cytidine deaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235009 lncRNA downstream 36213 17746530 ~ 17748502 (-) True G158706
TU234910 lncRNA downstream 362410 17413703 ~ 17422305 (-) False coq10a
TU234925 lncRNA downstream 389293 17394021 ~ 17395422 (-) True G158632
TU234920 lncRNA downstream 398161 17383342 ~ 17386554 (-) True G158628
TU234897 lncRNA downstream 449470 17333844 ~ 17335245 (-) True G158608
XR_006247788.1 lncRNA upstream 13600 17799842 ~ 17844102 (-) True LOC122328377
TU235093 lncRNA upstream 157683 17943925 ~ 17944160 (-) True G158774
TU235252 lncRNA upstream 213591 17999833 ~ 18001690 (-) True G158887
TU235259 lncRNA upstream 225884 18012126 ~ 18015877 (-) True G158892
TU235247 lncRNA upstream 255668 18041910 ~ 18043476 (-) True G158882
XM_043225105.1 mRNA downstream 591 17778474 ~ 17784124 (-) True pink1
XM_043225104.1 mRNA downstream 6795 17773405 ~ 17777920 (-) True LOC122328974
XM_043225107.1 mRNA downstream 346702 17433732 ~ 17438013 (-) True tmed4
XM_043224254.1 mRNA downstream 362198 17417622 ~ 17422517 (-) True coq10a
XM_043225030.1 mRNA downstream 423331 17354147 ~ 17361384 (-) True racgap1
XM_043224107.1 mRNA upstream 1355 17787597 ~ 17788930 (-) True LOC122328417
XM_043224106.1 mRNA upstream 2738 17788980 ~ 17796430 (-) True LOC122328416
XM_043224047.1 mRNA upstream 48601 17834843 ~ 17836972 (-) True fam43b
XM_043224158.1 mRNA upstream 92825 17879067 ~ 17914537 (-) True vwa5b1
XM_043225388.1 mRNA upstream 136345 17922587 ~ 17924503 (-) True ubxn10
TU234899 other downstream 441330 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 604936 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1426010 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 1541320 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 1614881 16143833 ~ 16169834 (-) True G158288
TU235255 other upstream 259696 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 445401 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 961149 18747391 ~ 18754712 (-) True G159076

Expression Profile