RNA id: XM_043224321.1


Basic Information

Item Value
RNA id XM_043224321.1
length 615
RNA type mRNA
GC content 0.53
exon number 2
gene id hoxc3a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18314833 ~ 18316762 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTGGAACTTTCAAAAACTCTCTGAACATCCCTACTCGTCCTCTGCTGGTGTCAGCCGCTCCGCGAATGAAACGACAGACTCCTTGGACCGGGCGAACGCAACGGAAAGAGACGAGGGGTGCAAGCTGTCAACTTCCTGCTTTTCAACCAAGAAGTACCCTTGGATGAGAGAGACACATCCACCTATGGGCTTCAGCCCCATTAGTGTCGTGGAGTCAGGTGAGTCCAGGTACGGCAGTGGTGGAGCACAGGATAGCAGCTGTCCTAACAGTAAGCGGGCACGTGCAGCGTTCACCTCCTCCCAGTTGCTCGAGCTGGAGAAGGAGTTTCACTTCAGCGCTTACCTGGGCCGCAACCGGAGACTCGAAATGGCTGCGCTGCTGAAGCTCACCGACCGCCAGATTAAGATCTGGTTCCAAAACCGGCGCATGAAGTATAAGAAAGATCACAAAGAAAAGTCAATGGCGAAGTCCTCTTACTCCTACCTGGAAGCAGGTAACCAGCCCTTTGTGATTAGCGGCAACATAGTGGATCCTTCGGTGCCAATGAAATTTCAATACTGCTATGAAAGACCATCGATGTCTGGTGTGAACTGTGCGCAGAGCCACTGGTGA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235357 lncRNA downstream 12258 18296244 ~ 18302575 (-) False hoxc1a
TU235346 lncRNA downstream 68006 18244923 ~ 18246827 (-) True G158955
TU235344 lncRNA downstream 76301 18237897 ~ 18238532 (-) True G158953
TU235343 lncRNA downstream 108375 18206143 ~ 18206458 (-) True G158952
TU235341 lncRNA downstream 111381 18203036 ~ 18203452 (-) True G158950
TU235355 lncRNA upstream 25599 18342361 ~ 18350347 (-) False hoxc6a
XR_006247816.1 lncRNA upstream 105097 18421859 ~ 18456506 (-) True LOC122328626
TU235396 lncRNA upstream 123888 18440650 ~ 18442479 (-) True G158984
TU235375 lncRNA upstream 242658 18559420 ~ 18563142 (-) False G158980
TU235376 lncRNA upstream 242658 18559420 ~ 18563142 (-) True G158980
XM_043225278.1 mRNA downstream 13116 18296046 ~ 18301717 (-) True hoxc1a
XM_043224578.1 mRNA downstream 79297 18231773 ~ 18235536 (-) False hnrnpa1b
XM_043224577.1 mRNA downstream 79297 18232409 ~ 18235536 (-) True hnrnpa1b
XM_043224588.1 mRNA downstream 94453 18214578 ~ 18220380 (-) True copz1
XM_043224702.1 mRNA downstream 137343 18162460 ~ 18177490 (-) True lima1a
XM_043224334.1 mRNA upstream 22287 18339049 ~ 18341234 (-) True hoxc5a
XM_043224333.1 mRNA upstream 25572 18342334 ~ 18345012 (-) True hoxc6a
XM_043224332.1 mRNA upstream 38899 18355661 ~ 18358381 (-) True hoxc8a
XM_043224330.1 mRNA upstream 39436 18356198 ~ 18376163 (-) True hoxc10a
XM_043224331.1 mRNA upstream 44292 18361054 ~ 18366240 (-) True hoxc9a
XR_006247822.1 other downstream 79297 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 266955 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 971448 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1135054 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1956128 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 430629 18747391 ~ 18754712 (-) True G159076

Expression Profile