RNA id: XM_043224329.1


Basic Information

Item Value
RNA id XM_043224329.1
length 2287
RNA type mRNA
GC content 0.47
exon number 4
gene id hoxc4a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18316637 ~ 18330701 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTGTCAGTAGTCGTCTATATGTACCCTGTAGAACCGAATTTGTGTCCAAAACATGAAACTCGCAAATACGTCTCTACAGGAATACATGGGCGACGTAAAAGCCACGAAAGCCAAGTTGGGTTTGTATTCATCTCAATCAGAAGCACGTGACTTTGCATGAAAGTCTCGTGTGCTTACTATTACAAGTGGAGTAGTTTGAATGAACAGGGGCTACTGCACGAAGACAAACATACTAGCCAAAATTGTGCAGGTCGTAGAAGTGGAAATATGTGATCATTTAAAGCCTTTATAGATTAATTAAACACCAGATCTGCTCTCAACCTCCACATTTTGCCTGAAGCCGTGGACCCATGAGGTAACTGtacaaatataatttctaaCGCAGTTTCACATAGCATACAGAAATTATAAAGATAACCACACATCGATAAATGTGCCGGGTAGCCAGGAAATTTGCTTTGCGCTGGCATGTACAGATTAAAGATAGAAAATATGCTCATtctgatgtatttatttgcctTCGTGTTAAACCTGCTGTAATGCAAAGTgtggtaaaaagaaaaaagaaaaaaaaaagcaccaaatAGCGCCGTGCAATTATTAGCCGTGGATTAAGCGTATCTCTAAGTAACGTTACATTCAAAtgtggattttttaaaatttcattaactttttttatttttttttaaacggtgtAATTAGCGAAAATCTTTTAGGCAACGGAACACACGAACAAGTTAACTGAGAAAAATGTCTAGGTGCTGTGACATGATCCGAGAAGATTTGGCCATTGTGTATGAGTATGAGAGAGCAAgaaaggggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaagagagagagagggatagaGAGACTGAAAGACTTCGCGGACAATGGCGGAAAATTGAAGGTATATTTGCGAAAGCTGTGGTTCCTTATCCGGGGACTACATCGCCCCATGCCATTGGGCCATCGAGTCACGTGGTTAAAGTAACTTTACAGGGTTGCTCGCTAGTAGGAGGGCTTTATGGAGCAGAAAAACGACAAAGctagaaaaattattttccacTCCAGAAATTAATGATCATGAGCTCGTATTTGATGGACTCTAACTACATCGATCCGAAATTTCCTCCTTGCGAGGAATATTCGCAAAATAGCTACATTCCCGAACATAGCCCCGAATATTACAGCCGTGCAAGGGACAGCGGCTACCAGCATCACCACCAGGAGTTATACCCTCCGCGGGCGAGCTACCAGGAGCGTCAGTATAACTGTGCAAGCATCCCTGAGCCTGATACTCAAAGAGGACATGGACTGCCTCACGCGGGGCACCTGCTCGGGAAAGGGCAATCTGCCTCATGTGAGCCCCCACCGTTACCCCTGTCTCCCGCCACCCCTCCGGCTGCATCCTCCGCCTGCAATCAAGCCACCCCGGAGCATCCCAACAGCTCAGCTTCTGCCAAACAACCCGTAGTGTACCCCTGGATGAAGAAAATTCACGTCAGCACCGTGAACTCTAGTTACAATGGAGCGGAACCCAAGCGGTCTAGAACCGCTTACACTCGCCAGCAAGTCTTAGAATTGGAGAAGGAATTCCACTATAATCGCTACTTAACGCGGCGAAGACGTATCGAGATTGCGCATTCCTTGGTCCTCTCGGAAAGGCAAATCAAAATTTGGTTTCAGAACCGCAGGATGAAGTGGAAAAAAGACCATAGGCTGCCAAACACCAAAGTCAGATCCTCTTCCTCCACGGGCATTTCCTCCGGGTCCAACACAAGCTCAGCGGCTGGCGTTGTGGCGGCAGCTTCCACCACTAACACCATGTCAGCCTCCGAGGACCTCTCCGGAACCGAGCGTGGCGAGGATATTACAAGGATAATCATTCGAAATTGCAAAATAGCTGAAGAATGCAGAGGAAAACGGAATCCTCGTTTGGTTGCTTTCCAGCACTTTACAACTCAAACAGCCAGCGCGCGAGGCTATTGGAGGAGGCCGTCACGTGACCGCACTGTTTACCCTTGTTGGAAAACAATTAAAGACGGCAGAGAGCGGTTCTGCGTGGAGACAACACGCCGAAGAGGATTCGTCAAAACGTTATGAAGGCCATATGTGGAACTTTCAAAAACTCTCTGAACATCCCTACTCGTCCTCTGCTGGTGTCAGCCGCTCCGCGAATGAAACGACAGACTCCTTGGACCGGGCGAACGCAACGGAAAGAGACGAGGGGTGCAAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09304 HOX_4; homeobox protein HoxA/B/C/D4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235357 lncRNA downstream 14062 18296244 ~ 18302575 (-) False hoxc1a
TU235346 lncRNA downstream 69810 18244923 ~ 18246827 (-) True G158955
TU235344 lncRNA downstream 78105 18237897 ~ 18238532 (-) True G158953
TU235343 lncRNA downstream 110179 18206143 ~ 18206458 (-) True G158952
TU235341 lncRNA downstream 113185 18203036 ~ 18203452 (-) True G158950
TU235355 lncRNA upstream 11660 18342361 ~ 18350347 (-) False hoxc6a
XR_006247816.1 lncRNA upstream 91158 18421859 ~ 18456506 (-) True LOC122328626
TU235396 lncRNA upstream 109949 18440650 ~ 18442479 (-) True G158984
TU235375 lncRNA upstream 228719 18559420 ~ 18563142 (-) False G158980
TU235376 lncRNA upstream 228719 18559420 ~ 18563142 (-) True G158980
XM_043225278.1 mRNA downstream 14920 18296046 ~ 18301717 (-) True hoxc1a
XM_043224578.1 mRNA downstream 81101 18231773 ~ 18235536 (-) False hnrnpa1b
XM_043224577.1 mRNA downstream 81101 18232409 ~ 18235536 (-) True hnrnpa1b
XM_043224588.1 mRNA downstream 96257 18214578 ~ 18220380 (-) True copz1
XM_043224702.1 mRNA downstream 139147 18162460 ~ 18177490 (-) True lima1a
XM_043224334.1 mRNA upstream 8348 18339049 ~ 18341234 (-) True hoxc5a
XM_043224333.1 mRNA upstream 11633 18342334 ~ 18345012 (-) True hoxc6a
XM_043224332.1 mRNA upstream 24960 18355661 ~ 18358381 (-) True hoxc8a
XM_043224330.1 mRNA upstream 25497 18356198 ~ 18376163 (-) True hoxc10a
XM_043224331.1 mRNA upstream 30353 18361054 ~ 18366240 (-) True hoxc9a
XR_006247822.1 other downstream 81101 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 268759 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 973252 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1136858 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1957932 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 416690 18747391 ~ 18754712 (-) True G159076

Expression Profile