RNA id: XM_043224331.1


Basic Information

Item Value
RNA id XM_043224331.1
length 4087
RNA type mRNA
GC content 0.42
exon number 2
gene id hoxc9a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18361054 ~ 18366240 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attattattattgttattgtttatttcagtgatgCGTTATTCAATTCAAAACGACGTTATATCATGAAACAAATTGAATTTGTATAGGCTGTGCCTCATGTTAACATCAACAATATCAGAACAccataataagaaaaataaataaacgtaatGAAAAACGGTCACGATGGAAACAACTTTGGTATCAAAGAACCACGCCCTCGGAAAAGCAGATATAAAGACTCTTTAGctccttgtttttttccctcttttttttatgtgtgttacAGATGTTCCTGAATAATATGCAACATTAAACGTGCGTTTGTTCAGTATATATGCCACTGCGTAATTATCCCAACAATTTTGATTTAGATGCGTTGATCCCCACAATATGCTACAGTCTGCAACCAAACCTTTCAattatttatacagtaatataagattttgctttcacttttgttgtaaattaaattCACTTTTGAGAATCTAAATCCCATGGCTTCCGCAGTACATTACGATGAGAAATCAGATCCAGGCttcctttaaaacacacactgaattCGCGAAACTGCATAAAATCAGAGATTTAACGCCCTTTGCTTCCTCTCGCTTTTTAGTCGTTTTGctgaatcaaaaacattaattcgCTGTTCAGCAGCTGAAAAGAGAGGCATAATGGCGCTCGTTGCATCGAGCTGCACTCTCTATAAAATCGTTTGACTAATATAGCTTCGCAActgttttaataacatattcGCAAGGCAAACGGAATATTAATAATCCAGATTGCCCTCGTATTGTTATTTGGTGCGTCTATATTTTGGTAATGTCTGGTGTTCCCACAGAAAACAggacggggaaaaaaaaaagcctgaccTCATGTGGCCGATTTCATACTGGGCCTAACACTGACAATGACTGCAGACCAAAATCAACGCATTTCCAATACGTCGCAATACGCTTAGGAGAAAGTTTTAACGTAAAACAATCACGCATTAACTGAAACACGGTCGAGtggtctcattttcataaaaGGGCATGTCCTTAAAGAAGCCTGTTGCATTGATTCgtgtgatttttgttgttgttgttgttgttcgtGTGCGCGCCtgtattaataattgaaaattaaGAAAGCAAACCTTTATATTCACGAATATTTCACACAGTTTTATTTCTAGCTGTGGTGTATAATTGTATTTTCGGCTAACAAGATCGTTTCTCTCGTTTGACAACAATTGGAATTAAGCTGGACAGAATCGCAAAAACGGCAAATtgcataaaaagaaagaaaatggaaagGGAACGGATAGCACAAGGAATTTACTAAACCTCTCTATATTGTTTTATGCacatgcctttttaaaaaaaaataccacacGAAGCCAACAACGCTTTTTCCTAGCTTTATCACggatatatacaattttaagaGCTTTGCGAACAGCCACTCGTCTATTTTCTAGTGTATTCGACAAAGGTTTGATGAGACTCCTTTCACAAGCGTAGTGTTGGTTTTATATTATACCAGGAACTCAACTGCAGTTTTATTAACGACACGTTTATGAACAATCAAATGGTCCTCGTAAAAATTTATTGAAGGACATAAAAGCATGCACGACCACTTGACGAATATAGCCGCAGTTGTGGTGCGTTTTCAGGCGTCTTACTATTCCCACCGCCCCGATTTGTTTAAAACTCCATTTTATGAGGGATATCccaattgcatttatttgaaactcgTGGAAAATAGGACTTCGGTGCGTAAAAGCAACCCTCTAGACAACACGAGAGCCGTATATTTGTCAAAATTATCCCGTTGGGTCCTTTCCAATTACATAGAATTAATAGTGAAACTGAGAAAGAAATATACaacggtttctttttttttctgactgttttaataaataacattgtgCAGTGAGGGATGCGCGCAGGGCTAGCCACGGCACAGTAGCACGCTCCAGACAGAGATTGATTACGCCGACAAATAGTGCCCTTTTTAAGAGCGTTAACGCACGCGCACCGTCGCTCCGCGGGGCTACAAATAATCATTCGGTTAATCGGCCGCGTCGCAATATACTAGAAGCACACCGCGTTCGTATATTTAGGCTCGGCGAAAAAGACAACGTTAGTATTAAGCAACCTACTGCAAGCTCGAAGCGCGTCGCCGTTCCGGGAGAACGCGCGCATTGATCTGCTGTGCAGTTTTTCTGGGGGTAAACGCAATCACGTGTTCCTCAGGCGTCCAATCCCAGCTGGGGAAGCTTTCTGAAATAATTACCTGTCTTGATTGTTCTACGGTCAGATAAAAAAGTACACATACACTCCATATAATAATCGGATGCATGTAAAAGAGAAGGGAAACATCGCCATGTCGGCTACGGGTCCCATAAGTAATTATTATGTGGATTCCTTGATCAACCATGAGAGCGAGGATGTTCTAGCGAGTCGTTTCACAGCCACCGGTCCGATATCCTCCAGCTCACGCCCGACGCCCCTGGTACCGGAATGCGCGGATTACCCGTCTTGCAGCTTTGCCCCGAAACCACCAGTCTTTACTACCTCGTGGGCCCCTGTTCACTCCCAGTCGTCAGTGGTTTACCATCCATACACTCACCAACCTCACCTAGGCACAGACTCAAGGTACGTTCGCTCTTGGCTGGAGCCTATCCCCGGCACCGTGTCTTTTCCAGGATACGCAGGGAATAGCAGGCACTACGGGCTGAAGCCCGACACCTTCCAGGATCCCCGCGCCGGAGACTGTTTGGGCTCAAACGGACGCACTTACACGGATTATCTCTACTGCTCTGCCGTCGACATTCGAGAAAAGCAACAAAACACGCCATCGCCTGAGACGGAAAGTCTGTCTTCCGGGAAGCACAAAGACGACAAGGCTGAATTAGACCCGAATAATCCTGTGGCAAACTGGATCCACGCGCGCTCGACCCGAAAGAAGCGTTGTCCGTACACCAAGTATCAAACACTCGAACTCGAAAAGGAGTTTTTATTCAACATGTACCTCACAAGAGACCGGCGATACGAGGTAGCGAGGGTGCTGAACCTGACGGAGCGACAGGTCAAAATCTGGTTCCAGAACCGAcggatgaagatgaagaaaatgaacaaagaaaaaaacgacAGCAAGGAACAATAGACCAAAAAAAAGCCGCGCTCATCAAAAGACTGAAGGAAGATCATCGTTAGCATCGTTACGAGTCTTAACGTTCGCGCCTCCGGCCCGTAAACAGGAAAGGGAGAAAACGAAAAGGCCGTCCTCGCGTGGATGGCCGTCAAAACGCGATTATATACGTATGATTTAATGTAAGTGTAATTTTACCATCCTGACGCGAGTCGTATTAATGCGTAGTTTGGATTTGCGTAACATTTCTTTACTCACAAATACGAAAGTGGACTCCGCGGAGAGGCTGCCCCGAAGTTTCAGAGAGAAAAATACTTGAActactttattttcaaattccTAATTTATGCTCTCCACGTGGCTGTCTCTTTTCTACGCTTCCATTATTTGTAGGAGGTCCGAAAGCCgaatattttataaagaataacaattctgtagtttaaaaaaagtatatatatatgcatatatatatatacgtgttcGCGTCGATGTGCTTAGTTTGTTTCTGATGTAcctgtttgtgtattttacatTCTTTAAACTGTAAATGAGTTTCATCATAGATTGTAGATATATCCAAATATATACAACCATGTTAATATGGCTTTTTTTGTGTCTCATTCCGTTTATTTGGGGGGGGAGAACGAGCGCTAACCGGTCATATCGTGGAGTTTGGCCTGCACGCGCAATGCTCTCACGCGGAAAGCACCGAGGTTGGAGTAAGCGCGCAATGGCAAGGTTATTGTGAAGAGGCTGTTTGTTGGTTGCGACCGTCGAAATGTCAGATTCGAGCATCCCACAAAGAGCAAACGCCGAAACGCCCGCGGCAGGCCTCGTCCTCTCCCGCGCCTCGCTCACATTTCGCCATTTAACTCGAATCCAGCTTCCAAAGCCCTCTTccctcatttttaaaattcGATTCGATTTCACCCTgagatgtaaataaaacaaataaatagatga

Function

GO:

id name namespace
GO:2001213 negative regulation of vasculogenesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09294 HOX_9; homeobox protein HoxB/C/D9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235355 lncRNA downstream 10707 18342361 ~ 18350347 (-) False hoxc6a
TU235357 lncRNA downstream 58479 18296244 ~ 18302575 (-) False hoxc1a
TU235346 lncRNA downstream 114227 18244923 ~ 18246827 (-) True G158955
TU235344 lncRNA downstream 122522 18237897 ~ 18238532 (-) True G158953
TU235343 lncRNA downstream 154596 18206143 ~ 18206458 (-) True G158952
XR_006247816.1 lncRNA upstream 55619 18421859 ~ 18456506 (-) True LOC122328626
TU235396 lncRNA upstream 74410 18440650 ~ 18442479 (-) True G158984
TU235375 lncRNA upstream 193180 18559420 ~ 18563142 (-) False G158980
TU235376 lncRNA upstream 193180 18559420 ~ 18563142 (-) True G158980
XR_006247881.1 lncRNA upstream 247436 18613676 ~ 18615145 (-) True LOC122329081
XM_043224332.1 mRNA downstream 2673 18355661 ~ 18358381 (-) True hoxc8a
XM_043224333.1 mRNA downstream 16042 18342334 ~ 18345012 (-) True hoxc6a
XM_043224334.1 mRNA downstream 19820 18339049 ~ 18341234 (-) True hoxc5a
XM_043224329.1 mRNA downstream 30353 18316637 ~ 18330701 (-) True hoxc4a
XM_043224321.1 mRNA downstream 44292 18314833 ~ 18316762 (-) True hoxc3a
XM_043224261.1 mRNA upstream 13714 18379954 ~ 18382930 (-) True hoxc11a
XM_043225305.1 mRNA upstream 25710 18391950 ~ 18393519 (-) False hoxc12a
XM_043225306.1 mRNA upstream 25710 18391950 ~ 18393519 (-) True hoxc12a
XM_043225280.1 mRNA upstream 34757 18400997 ~ 18403756 (-) True hoxc13a
XM_043224736.1 mRNA upstream 90685 18456925 ~ 18507741 (-) False rarga
XR_006247822.1 other downstream 125518 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 313176 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1017669 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1181275 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2002349 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 381151 18747391 ~ 18754712 (-) True G159076

Expression Profile