RNA id: XM_043224334.1


Basic Information

Item Value
RNA id XM_043224334.1
length 1397
RNA type mRNA
GC content 0.45
exon number 2
gene id hoxc5a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18339049 ~ 18341234 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aataaaactccTAAACAACTTATGCATACTTTATTAGCCTATTCCGTCTCTGCGGTGACCGTGCGCTTTTTTTGCGAGTCTCTCCAAGGTTATATTGTTTTGGAAACAGAATGAGCTCGTACGTTGGAAAGTCTTTTTCCAAGCAAACGCAAGACGCCTCCTCTTGCAGAATGCACACTTTTGGCAACTATGGAGCTCACTCTGAGTTCCACGAGTCCAATTACGCGTACGAGGGACTCGATCTCGGCGGATCGTTCAGTTCTCAGATCCCCTCCAACTCTTTGAAACGGGAGGCGATAAACACAACCGACCGCGCGAGGAGCGGTGCGGCCGTTCAGCGAGCACAGTCCTGTTCAGCTTTGGGCTCTCGTAGCTTCGTAAGCACTCACGGGTACAACCCCCTCAGTCACGGACTGTTGAGCCAAAAAGCCGAGGGGAATATGGAAGTTATGGAGAAGCCCAGCGGCAAGAGCCGCGCAGACGATATCAAAATGGAGACTACTTCGGCGATAAAGCAACAAACTAATTCGACTCAGCGTCAGAACCAGTCGCAGCCGCAGATATATCCGTGGATGACAAAGCTACACATGAGCCACGAATCTGATGGTAAAAGGTCACGAACCAGTTACACCCGGTACCAGACTCTGGAGTTGGAGAAAGAGTTCCATTTCAACCGATACCTCACGCGTCGCAGACGTATCGAGATTGCCAATAACCTCTGCTTGAACGAACGCCAAATTAAAATTTGGTTCCAGAACCGTCGCATGAAGTGGAAGAAGGACTCGAAGTTGAAAGTAAAAGGAGGACTATAATAAAGTGGTGTGCGGATCAGCTTGGAAATAAAGGCGGTGTACTGATTTCAAATAGATTTTCTTTGTGACAACAGTCGATGTCTTTTCATTTGTCTACACGGTGTCATGTTGTTATGTGAATATGTCcatattttccatatttattgATAGCGCTGCCTCCCAGGAGCGCGGGAGGTGCTTATCTGAATAATGTATGAGcttaaaactttatttgaatatgCTTTACTAAAATCACTTGTGTCAATAACGTGCATAATATGCCAAGGCCTGCATCCAGTTACGTTGACTTAAATGTAAGTGCAAATAATGTGGTGCTTTGCTTAAACGTTCATCAATCTGCCCGTCGCGTTAAGCGTTTTGACGGGACCTGTCTTTCTGTCCGTTGTACTTTCTGTCGTAAATACATCTATACAACTGTAATGTCCACAGAAGGATGGTAAACCGCACGCCACGATGATAACGCAACAACTGTGGTGTCATATTAATCGCCGTGTATCATGTTGTCTGTCAGCCAGCAGCCAAATGATAATTTTCTCTTGACCATCACGTCTGTTTAAATACTGTGCAATCAGAACATTTCActgg

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235357 lncRNA downstream 36474 18296244 ~ 18302575 (-) False hoxc1a
TU235346 lncRNA downstream 92222 18244923 ~ 18246827 (-) True G158955
TU235344 lncRNA downstream 100517 18237897 ~ 18238532 (-) True G158953
TU235343 lncRNA downstream 132591 18206143 ~ 18206458 (-) True G158952
TU235341 lncRNA downstream 135597 18203036 ~ 18203452 (-) True G158950
TU235355 lncRNA upstream 1127 18342361 ~ 18350347 (-) False hoxc6a
XR_006247816.1 lncRNA upstream 80625 18421859 ~ 18456506 (-) True LOC122328626
TU235396 lncRNA upstream 99416 18440650 ~ 18442479 (-) True G158984
TU235375 lncRNA upstream 218186 18559420 ~ 18563142 (-) False G158980
TU235376 lncRNA upstream 218186 18559420 ~ 18563142 (-) True G158980
XM_043224329.1 mRNA downstream 8348 18316637 ~ 18330701 (-) True hoxc4a
XM_043224321.1 mRNA downstream 22287 18314833 ~ 18316762 (-) True hoxc3a
XM_043225278.1 mRNA downstream 37332 18296046 ~ 18301717 (-) True hoxc1a
XM_043224578.1 mRNA downstream 103513 18231773 ~ 18235536 (-) False hnrnpa1b
XM_043224577.1 mRNA downstream 103513 18232409 ~ 18235536 (-) True hnrnpa1b
XM_043224333.1 mRNA upstream 1100 18342334 ~ 18345012 (-) True hoxc6a
XM_043224332.1 mRNA upstream 14427 18355661 ~ 18358381 (-) True hoxc8a
XM_043224330.1 mRNA upstream 14964 18356198 ~ 18376163 (-) True hoxc10a
XM_043224331.1 mRNA upstream 19820 18361054 ~ 18366240 (-) True hoxc9a
XM_043224261.1 mRNA upstream 38720 18379954 ~ 18382930 (-) True hoxc11a
XR_006247822.1 other downstream 103513 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 291171 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 995664 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1159270 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1980344 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 406157 18747391 ~ 18754712 (-) True G159076

Expression Profile