RNA id: XM_043224577.1


Basic Information

Item Value
RNA id XM_043224577.1
length 1604
RNA type mRNA
GC content 0.49
exon number 11
gene id hnrnpa1b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18231643 ~ 18235536 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGCCTAAACCAATCAGCTCCAGCAGTAGGAGGGAACTGTATTTGCTCGCGCTATTTATGGTATCTCCCCACTTCTCAGTGTGTGTCTCACCGACAAGCGTGTGGCGCAGCACGGGCAGAAATAGTCGGTAGGATGTCCAAAGAGGGCCAACCACGTGAGCCAGAGCAGCTGCGGAAGCTCTTCATTGGAGGGCTCAGCTTTGAAACCACAGACGATAGTTTGCGGGCGCATTTTGAACAATGGGGCACCTTAACGGATTGCGTGGTGATGAAAGATCCAAACACCAAACGCTCCAGGGGCTTTGGGTTTGTTACTTATTCCAGCGTGTCTGAAGTTGATGCTGCTATGGATGCACGACCCCACAAGGTCGACGGTAGGCTTGTGGAGCCCAAACGAGCCGTGTCTCGAGAGgACTCCAACAAGCCGTTTGCTCACACAACGGTGAAGAAGATATTTGTCGGTGGCATTAAAGATGATACTGAGGAGGACCATCTTCGTGACTACTTCAAACAGTTTGGCAAAATTGAGGCCGTTGAGATAATGGTTGACCACAAGACCGGAAACAAAAGAGGCTTTGCCTTTGTTACATTTGATGACCATGACTCAGTTGACCGTATTGTCATTCAAAAATACCACACTGTGAATGGGCACAACTGTGAAGTCAGAAAAGCTCTGTCTAAACAAGAGATGCAGAACACTGGCATGAACTCAAGAGGCCgtggtggtggaggaggaggaggaggaggtggtggcggcggtggtggaggaggaggaaactTCAACAGATATGGCAATAATGGCGGCTACAACAATGACTTTGGTGGCGGTGGCAACCGTGATGGATATTTTGGAAGAGGAGGCAGAGGTGGTGGAGGTGGCGGTTATGGAGGTGACTGCTACAACAACGGATTTGGTGGAGGAGATGGTAACTATGGTAGTGGCCCTGGTAACTATGGTGGAAACCGTGGATATGGAGGTGGCAGTGGAGGAGGTGGACATGGTTATGGCAACCAGGGTGGTGGTTATGGTGGCGGCGGCGGCAGCAGTGGTGGTGGCTATAATGACAATTACAACAACGGCAATGGAAACTTTGGGGGTGGCAACTTTGGAGGAGGTGGTGGCAGTGGAGGTGGTAACTACAATGACTTTGGCAACTATAACAACCAGCAGTCAAACTATGGTCCTATGAAAGGGAACTTTGGAAGTGGCGGAGGTGGTAGAAACAGTGGCCCATATGGTGGTGGCTATGGCGGTGGATCTGGTGGTGGATATGGAGGCGGCTCTGGTGGTAGACGGTTTTAAACTCAAAGGACTGAGTGCTTTAGGAGAGGAGAGCGAGAGAAGTGACAGGGCAGATGCAGGTTTACATCCCTAGATCTGCTCAGCCAAACAGGTGTGGCAGATTTACAGCTGCCACCAGAAGAAGTGTACAGTAGCGCTATCATGTGTGGGACATCATGAATTTGTCATCATGCAGACTTATTTTATATTGTCTATGGAAAAGCATTCCAATGAGGTTTTATGTAGAACTACAGTCTTTATGGTTTTGATTTTTATGTAACCAATCAAggtgaaataaaacatcatttttgttttttttaa

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235343 lncRNA downstream 25951 18206143 ~ 18206458 (-) True G158952
TU235341 lncRNA downstream 28957 18203036 ~ 18203452 (-) True G158950
TU235340 lncRNA downstream 31443 18200767 ~ 18200966 (-) True G158949
TU235338 lncRNA downstream 36040 18195399 ~ 18196369 (-) True G158948
TU235344 lncRNA upstream 2361 18237897 ~ 18238532 (-) True G158953
TU235346 lncRNA upstream 9387 18244923 ~ 18246827 (-) True G158955
TU235357 lncRNA upstream 60708 18296244 ~ 18302575 (-) False hoxc1a
TU235355 lncRNA upstream 106825 18342361 ~ 18350347 (-) False hoxc6a
XR_006247816.1 lncRNA upstream 186323 18421859 ~ 18456506 (-) True LOC122328626
XM_043224588.1 mRNA downstream 12029 18214578 ~ 18220380 (-) True copz1
XM_043224702.1 mRNA downstream 54919 18162460 ~ 18177490 (-) True lima1a
XM_043224711.1 mRNA downstream 108705 18120295 ~ 18123704 (-) True igfbp6b
XM_043224710.1 mRNA downstream 116083 18107885 ~ 18116326 (-) True pip4k2ca
XM_043225198.1 mRNA downstream 127289 18102311 ~ 18105120 (-) True gpr182
XM_043225278.1 mRNA upstream 60510 18296046 ~ 18301717 (-) True hoxc1a
XM_043224321.1 mRNA upstream 79297 18314833 ~ 18316762 (-) True hoxc3a
XM_043224329.1 mRNA upstream 81101 18316637 ~ 18330701 (-) True hoxc4a
XM_043224334.1 mRNA upstream 103513 18339049 ~ 18341234 (-) True hoxc5a
XM_043224333.1 mRNA upstream 106798 18342334 ~ 18345012 (-) True hoxc6a
TU235255 other downstream 184531 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 889024 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1052630 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1873704 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 1989014 16240810 ~ 16243395 (-) True tac3a
TU235534 other upstream 511855 18747391 ~ 18754712 (-) True G159076

Expression Profile