RNA id: XM_043224710.1


Basic Information

Item Value
RNA id XM_043224710.1
length 3850
RNA type mRNA
GC content 0.39
exon number 10
gene id pip4k2ca
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18107885 ~ 18116326 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCAGTCCTGTCAAACGCAGGAGATTGTCAGACGAAATCATAATTATGGTCAGCttagtatttatgtttttaccgTCTCATCTCACCTGTACGTTCACAAACCACGTGACGCGGGCTACACTCAGGTGAGAGTCTGACACACGTTCTCGCTGTCACATTATATCAAGAGCTGTTCTTCTGGATTTGTGGGAGGAGCGTCTGGATCGCTGCCACACTTCAGCAACCTAGTGCTGTTCACTTCCACGAAGAATCGGTCCGCCCGGGCCCGCGAACGCAGCGGAAAGCCGACCCCCGCAGCTTAGCGCTTGCGTTGTTTTCGACCTTTGATTGTCAGCTAGAGGAACCGGAGCAGGAACAGAGGGAGGCGGATCCGCGAGGAAAAGAGACCGCTGTGTTACAGGGGAGTGACCGCGATGATGGCGTCCCTCGGTAACACCGGCAGCGCCTCCAGCCCGATGGTCATGCTCGCCCCCAAAACCAAGACCAAAAAGAAACACTTCGTGCAGCAGAAGGTCAAAGTGTTTCGGGCGAGCGACCCGATGCTCAGCGTGTTCATGTGGGGCGTTAATCATTCGATAAATGATTTGAATCAAGTTCCAGTGCCTGTCATGCTGCTCCCTGACGACTTCAAAGCCAACACCAAAATTAAAGTGAACAACCATCTCTTCAACAAAGAAAATCTTCCAGGCCATTTTAAGTTTAAGGAGTACTGTCCGCAAGTCTTCAGGAACCTCAGGGAGAGATTTGGAATTGAAGATCTTGACTATCAGGTGTCCCTGGCTCGCAGTGCTCCAATGAGAGGCGATGGACAAGGAGAAGGTCTTCTCTTCACGTCCTATGACCGTACGCTGATAGTAAAGCAGATCTCCAGCGAAGAAGTAGCTGATATGCATAACATTCTGTCCGAGTATCACCAGCATATAGTGAAGTGTCATGGCAGTACACTCCTCCCTCAGTTTTTGGGCATGTACCGGGTTACGGTGGAGAGCGAGGACACGTACCTGATCGTCATGAGGAACATGTTCAGCCACAGACTCGTTGTCCACAGGAAATACGACCTGAAGggCTCCCTGGTAGATCGCGAGGCCAGTGATAAAGAGAAGGTGAAAGAGCTGCCGACTTTCAAAGACATGGATTTCAGAAATAACATGCAGAAGGTGTACGTGACAGAAGAGCAGAAAGAGAAGATTATGGAGAAGCTGAACCGAGATGTAGAGTTCCTGGTGAAGCTGAAGATAATGGACTACAGCCTGTTGTTAGGCATCCATGACGTGGCTCGTGGCGAGcgggaggaagaggaggccGAGGAACCCAGCTGCGAAGACGACACGGATCCCGAGAACGGCCTCGCTCCGGCCGCGCAAGTGGGATCGTACGGCACGTCGCCGGAGGGCATCGCCGGGTACATGAACTCCTTCAAACCCCTGGGACCCGGAGAATTTGACCCTTATGTCGACGTATATGCCGTCAAGAGCGCCCCGGGAGCTCCGCAGAGGGAGGTGTATTTCATGGGCCTCATTGACGTGTTGACGCAGTACGACACTAAGAAGAAAGCTGCCCACGCCGCAAAGACCGTAAAACACGGCGCTGGTGCTGAAATATCTACGGTCCATCCAGAGCAGTATGCCAAACGATTCCGTGAATTCATCTCCAACATTTTTGCGTAACCACTTCTATGGGTGTCTGTAGCAGCACTTCAAGGTCACGTTTCACCCCAAAttcaaaagacagaaaaataataaattatattttgcataaagaaattAGGTCTATTTTTAGGACCATTAAGTTATTTTTcattgtgacattatttttatgacaataaaacacatttgccCCATTACTGTAATATGTCcagatgtgttgttttttttttttttttgagggggtCTTTTTGTTCATATGTATGTGATTATCATTCCAAtaatacagtactttttttctttttctttttttttctcaaataaaatgtagtgtgtgtgtgcacgcacagaaaagaaatgtattaataattaatgtattttaaaagtactgTATTAAGTATGAAATTGTGTTTCTTATTTTAGAcaatagtttaatattttagataagtaaaaacaatatataaaagtattccttatttttagatttttttgtatttgagaTATTaggtatatatgtacataaacacaatacatcaatacagtaatttttaataaaattattaggTTAGAATCTATTATGGggttattattttcataacaattgaagtatttcatatattagattattattatttttttttttattaatacagtttTCAGTGTGGGTATgagtatactatatatattgaATTGTTTGCATTTGGAggggaaatgtgttttattctaaaaataaagtctgaataaaaaaatcttaatagtGTGTAATaggcttaatttttttatgcaaaatataattttgttttattctacagtgacatatgtgaccctggagcgcAAAACCACTTATAAGTAGCATGGATATACTTCTAGCAATagcaatatttgtttaaatttaaacagtATGGGtcaaattattgatttttctttcatgccaaaaatctttaggatattaagtataGATCATGTTCCCTGGAAATGTTTAGTTCAAtcttaccataaatatattaacacgtaatttttgattagtaatatgcacttGCTAGGGCAATTTTTctcagtgtttatattttttttgcacgctCAAATATGGTCCCATCCCAcaccaatttaaaaataaattgaccCTTTTAttttggtccagggtcacatgtgcACCGTTCTTCATGTTCAAGGTTTTGTCAGTTTCTATCTACTGTCATCACATcgatgaatttttttttttattataattttttttttttttataaaagcatcTCTTCGTATTTTTACACATTGTgcttcatattttcataaactTTCATAACACGAGATTTAAGCACGACATGTTAACATGTCTCATTCACACTACAGCGACATTCATTAAGGGTATATTCACAAATTCCACTAGATTCACACGTATCACTTTGTGACATAACCTGCAAACCATGGGAACATCGTCTAATCTTTCAAGGAGATATAACTCCAAACCTGTAGCAGTGTCACAGTTTGTTCTTGgtgtgttctctctctttctttggaCGTTGGCTTGGCAGAGAGAGAAACCGTCGCCTTAACCGCTTGTGGAGGAATAGCAGAAACTCACGTTGTGCTATGCTTTAAGTGCATGCTAGCTTCATTTGATATATGCAGCACTAGAATGTTGTGAGAAGGATAAGATACTTCTAAAAAGAAGacgaaaaaaacacaaactgacCAGCCGGTGACCTAAAGCGTACATTAAGGGTCTAgattaaagtaatattatgaaTCGAATGCTGATTGTTTATACGGATGGATGGAGCACACACacttcttttctcttctttgagCTATTTTATGCAGTTAGCCTTAATGCAGAAAAGAGGAATTTTGTAGTTTGTAGTAGAAACACTTTAGCAACACTGAGCTGATTTAGTATGAAATGCCttattgttgcattttatttattttgcaaatcaGTGTTTGgaccaaatatatttttcagagATTTCCAAAAACATggtttctgttatttattcattttagcttTGTACGATTACAATTGGCACAATTACAGTATGTCCATAATAGTTGTACtttaaatggtatttttagGGCTGTTTTAACACCTTGACATGTTGTTACATTAAGACAAGTTGTTACATTGTGTTCACATAATGCATGTAACGACTGTAACTACCAATAATGTGCATTCCtaagtacaataaaaacatttttttcttataa

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0016309 1-phosphatidylinositol-5-phosphate 4-kinase activity molecular_function

KEGG:

id description
K00920 PIP4K2; 1-phosphatidylinositol-5-phosphate 4-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235247 lncRNA downstream 64409 18041910 ~ 18043476 (-) True G158882
TU235259 lncRNA downstream 92008 18012126 ~ 18015877 (-) True G158892
TU235252 lncRNA downstream 106195 17999833 ~ 18001690 (-) True G158887
TU235093 lncRNA downstream 163725 17943925 ~ 17944160 (-) True G158774
XR_006247788.1 lncRNA downstream 263783 17799842 ~ 17844102 (-) True LOC122328377
TU235329 lncRNA upstream 76644 18192970 ~ 18193557 (-) True G158947
TU235328 lncRNA upstream 77926 18194252 ~ 18194524 (-) True G158946
TU235338 lncRNA upstream 79073 18195399 ~ 18196369 (-) True G158948
TU235339 lncRNA upstream 79491 18195817 ~ 18196251 (-) False G158948
TU235340 lncRNA upstream 84441 18200767 ~ 18200966 (-) True G158949
XM_043225198.1 mRNA downstream 2765 18102311 ~ 18105120 (-) True gpr182
XM_043225144.1 mRNA downstream 36922 18065270 ~ 18070963 (-) True tspan31
XM_043223966.1 mRNA downstream 49146 18045926 ~ 18058739 (-) True march9
XM_043225425.1 mRNA downstream 170306 17935574 ~ 17937579 (-) True LOC122329235
XM_043225426.1 mRNA downstream 170308 17935574 ~ 17937577 (-) False LOC122329235
XM_043224711.1 mRNA upstream 3969 18120295 ~ 18123704 (-) True igfbp6b
XM_043224702.1 mRNA upstream 46134 18162460 ~ 18177490 (-) True lima1a
XM_043224588.1 mRNA upstream 98252 18214578 ~ 18220380 (-) True copz1
XM_043224578.1 mRNA upstream 115447 18231773 ~ 18235536 (-) False hnrnpa1b
XM_043224577.1 mRNA upstream 116083 18232409 ~ 18235536 (-) True hnrnpa1b
TU235255 other downstream 60007 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 764500 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 928106 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1749180 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 1864490 16240810 ~ 16243395 (-) True tac3a
XR_006247822.1 other upstream 115317 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 631065 18747391 ~ 18754712 (-) True G159076

Expression Profile