RNA id: XM_043224737.1


Basic Information

Item Value
RNA id XM_043224737.1
length 3522
RNA type mRNA
GC content 0.49
exon number 9
gene id rarga
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18456925 ~ 18507741 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCTATGTGTAGCGCGTGCgccttgtgtgtgttttcatttattttcgtGCGGCGCTGATGCCTGCGCGAGCGCTTTCTGGGTCCGCGACGTGTTTCGAGAAATGACTGGTTACCTTTACCTGGTACATCCTGTCGAGTGAAAGCCGAGCCGTGACGCAGATCTGAGAAGTTTGCCAACATTGTCACACAGGTCGTTGAAGCGCACGACAGGCCCAACCAGCCTTTGGCAATCAACCGTCGCCATGGCAGCCAATAGGGAACGGCAGGTGGGTCACATGACCGGCTTCCCACCTGCTGTCTACCCCTTTGCCTTCAATTCCATGCGGAGCCACTCCCCCTTCGACCTGCTGACCAATAGTAGCCTGTTTGGACGGTTTGGGGCGGACCTTCCCAAAGAGATGGCAGCGCTGTcGGTGGAGACCCAGAGCACCAGTTCGGAGGAGATGGTGCCCAGCTCCCCTTCTCCACCACCTCCGCCCCGTGTTTACAAGCCCTGCTTCGTCTGCCAGGACAAGTCTTCTGGGTACCACTATGGTGTCAGTTCTTGCGAGGGCTGCAAGGGTTTCTTCCGTCGCAGTATTCAGAAGAACATGGTGTACACCTGCCACCGTGACAAGAACTGCCAGATCAACAAGGTCACACGCAATCGTTGCCAGTACTGCCGGCTGCAGAAGTGCTTCGAGGTTGGCATGTCCAAGGAAGCTGTGCGCAACGATcgaaataagaaaaagaaggaCGTGAAGGATGAGGTTGTTCCACCAGAGAGCTACGAGCTGAGTGGAGAACTGGAGGAGCTGGTCAACAAAGTGAGCAAAGCACATCAAGAGACCTTCCCGTCACTCTGCCAGCTGGGAAAATACACCACAAACTCAAGCTCAGACCACCGGGTTCAGCTGGACCTGGGCCTATGGGACAAATTCAGTGAGCTCTCCACAAAGTGCATCATTAAAATTGTGGAATTTGCCAAACGCCTTCCGGGCTTCACCACCCTCACCATCGCAGATCAGATCACCCTCCTTAAATCAGCCTGCTTGGACATTCTAATGCTGCGAATCTGCACACGATACACACCGGAGCAGGACACAATGACCTTTTCAGATGGACTGACCCTCAACCGGACTCAGATGCATAATGCCGGCTTCGGTCCGCTCACTGACCTGGTGTTTGCCTTTGCTGGTCAGCTTCTGCCCCTTGAGATGGACGATACGGAAACTGGCCTCCTCAGCGCCATCTGCCTCATTTGTGGAGACCGAATGGATCTTGAGGAGCCTGAGCGTGTAGATCGTCTACAGGAGCCCCTTCTGGAAGCTCTGAAGATCTATGCACGACGCCGCCGACCCAACAAACCTCACATGTTCCCTCGCATGTTGATGAAGATCACTGACCTACGTGGCATCAGCACCAAGGGAGCAGAAAGGGCCATAACTCTTAAGATGGAGATCCCAGGCCCCATGCCTCCTCTCATCCGAGAGATGCTGGAAAACCCAGAGGCTTTCGAGGATCAGGCCGAGTCCACAGAGAAGAAGCCCGAACCCGAACAGCCCGCTCCTCCACCCGCCCTGCTCACTATGAAGAAAGAGCAGGAGGACGAGGACGACAGCTGGGCCACGGAGAACGGCAGCGAGCCTTCACCGGAGGAGGAggacgacgacgacgatgacggagaggaggagaggggtACCGACAGCGACGGAGAGGCCTGGGGCAGCCAGGAACCCAACGTGGACGTGTCCAGAAAGAGCCATGGAGGAAGAGCTCAGTGAGGAAGCGTTCTTCTTCCAGCCTTACCTGTACAGACACTCCTAACTCAGGCCACTCGGTCAACGATGAGAGACATTAGTGAGTCGATTTGAAGAAACTCACGTAAAAAACCTCTTCTCAGGACCTCTCCCGCAGAACGAGAGGGAAGGCGAAAGACAAAACAGCTGGCTTTTCAGACAAAATAACTGCCGGTTTTATAAAACTTGTTTGTATGCTTTGAAAAGGAGAAGCCAAATGGACTTATACCATTAACAGCTGACTCTCAACGGGTTCAAAAGagtctttcaaaagaaaatacaggatgaaaactgaaaatgcttatCTTTTTCTGTTGTCGTTGACGCTTTTTGAatatcattttgactttttcagcCTTGAGATAGTTTGATctctttacattttatgaataagcccatacatatctatatatacctttatatattttttgtcctgTATCCTATTTTCTTAGTTATATTTTGTTTGGATGGCTTTCCTGGGCAGACTTACAGAAAGATAATCGGATTGCTATAACTGGCAGACCTCTGCTGAGTCTTTATCCAGCTGCTTGGTTGGGTTCTTGGGCACTTTGGCTCAGCGTTAGATGTCATTGATAATCAGTTCAGTGGCTGGGTTATCTCCCGTCGaatgatttgtgtttttagggGAATGCCATTACATATCGGCTTAAATTGCGTCACATGATTCGCTGCCAATTGAATGGTGTGTCTGTGCCAAAGTTTGCAGCTTGTAGGGTTCAACTCCTGTCAGGGAGCCCAGCTCCAAACAGAAACACCCACATGTCCATTACCTTGAAGTCTCTGCATCATGCATATGATGTCATACTGGACCGGTTTCATTCAGAGTGCTCAGGCAGAAGTTATGTAGCACTCGGGCAGAATTAACTTtgacctcatcggcctagtcAACTCTTCAGGAGAACTACACAAATGCATCTGGACGAATTTTCGGAATCTCATGCATCACAGTGAAATAAAGGAACGCGGGCCTGagctaacacacaaacacacacacacacacacacatttataaagcATGCTACATGTATTCAGAACTCTtgctataaaaaagaaaaacatgaaattcaGACTCAGGGCATCCTCTGTAAGGACCAAACGCTTGCTGTCTGGCGGCAGCCTAGAAACGGACAGCATTTATGTGTTACGTTTCAGAAATCTCGCCGCGTCACcatgaactgaaataaatctGCGTATCTTACACGGAACTTCTTTGCGGAACTTTCATCTTCGTCATAGAAATAGGGTTCTTTTTCTAATGTTACCTAATCCATTTTATTGCCAAAAACACACAGTATGCAATTTGGTGGTCGTGTGCCACTGAACATTAAAAGGTATCAGTCTAGCAATACGACTATGACCAGAactcagctgtgtgtgtgggtgtgctcgtatgtgtgtgcgtgtgtgtgtgtgtgcgtgtgttgaACGGGAGGATGGCTGCACTCAATAAGCTGTAGTGTAGTactttgttaaatgaatgtcatCACTGTGGTGCtgtcagagagtgtgtgagctGTCATACTGACCTCTTCTCCTTCAGAGTTGCACCACAGCCACACGTATAGCAAGTGGAATGTTGAGATTACTTTAACTCTTCGTCATATTTTTCTTGTTCTCTAAACTTGGCTAATGTATTGTCAGTCCTTTGTTCGTGTTCAACAAATTCTGTTATATAAAAAGCCATATAAACAATAAGAGgcacaataaacatttttttgagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247816.1 lncRNA downstream 419 18421859 ~ 18456506 (-) True LOC122328626
TU235396 lncRNA downstream 14446 18440650 ~ 18442479 (-) True G158984
TU235355 lncRNA downstream 106578 18342361 ~ 18350347 (-) False hoxc6a
TU235357 lncRNA downstream 154350 18296244 ~ 18302575 (-) False hoxc1a
TU235346 lncRNA downstream 210098 18244923 ~ 18246827 (-) True G158955
TU235375 lncRNA upstream 52015 18559420 ~ 18563142 (-) False G158980
TU235376 lncRNA upstream 52015 18559420 ~ 18563142 (-) True G158980
XR_006247881.1 lncRNA upstream 106271 18613676 ~ 18615145 (-) True LOC122329081
TU235489 lncRNA upstream 134857 18642262 ~ 18644584 (-) False G159048
TU235490 lncRNA upstream 134857 18642262 ~ 18644688 (-) True G159048
XM_043225280.1 mRNA downstream 53169 18400997 ~ 18403756 (-) True hoxc13a
XM_043225305.1 mRNA downstream 63406 18391950 ~ 18393519 (-) False hoxc12a
XM_043225306.1 mRNA downstream 63406 18391950 ~ 18393519 (-) True hoxc12a
XM_043224261.1 mRNA downstream 73995 18379954 ~ 18382930 (-) True hoxc11a
XM_043224331.1 mRNA downstream 90685 18361054 ~ 18366240 (-) True hoxc9a
XM_043225347.1 mRNA upstream 28307 18535712 ~ 18545493 (-) True gdap1l1
XM_043225346.1 mRNA upstream 28307 18535712 ~ 18545492 (-) False gdap1l1
XM_043224453.1 mRNA upstream 56657 18564062 ~ 18570774 (-) False LOC122328645
XM_043224452.1 mRNA upstream 56657 18564062 ~ 18567287 (-) True LOC122328645
XM_043224450.1 mRNA upstream 60767 18568172 ~ 18570838 (-) True LOC122328643
XR_006247822.1 other downstream 221389 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 409047 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1113540 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1277146 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2098220 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 239986 18747391 ~ 18754712 (-) True G159076

Expression Profile