RNA id: XM_043224963.1


Basic Information

Item Value
RNA id XM_043224963.1
length 4406
RNA type mRNA
GC content 0.54
exon number 22
gene id magi3a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15347417 ~ 15474390 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGCCCGCCCCCctcgctctgattggctgctctgCTCTCGTCCGCTCCGCATTGGTGTTGGTGTGCGCCTCTGACAGTCGCCGCTCGCGTTTGGCGCAAGTAATAACAAGGTGAAAATGACTACAAAGTTGCAAAGCTGCGCCCGCATTTAATCACCTACGCTGGGCGCCGATAGCTCCACGCAGACAACAACAAGCCACTCAAGAGGGCGTTTCTACAAGAAGCAAAGGTCGTCGGACTGTGGACTTAGTTTATGCCGTGTAGCCCGTTTCAGATCCAGGTACGGTGTTGTTCGTGGTTTCCCGTGAACGCGCCGGTGGCTGATGTCATTGGAACAGGTGCGCGAAACCCAAGTTAACAACAGTCGCCCTAGATCGCGAGGGATTACACACGGATGTGAGTGTTTTTCTACGGCGTTTCATTCATCAGCCGGTATTACGAAGCGATTTGAGGCTGCGTTATTTTTATGTGCCTGGATAAAGTAAGCTGTCCAGCCTCGGGCGGTAGTTTATTGCTATTTCCGCGTCTTTTTCTCCTAGAAAGCGCTTGTTTGGATCATTCGAAGACGATATTTGGCGACACTTCTTGGTGAGCTGTGAGGTCTACCGTAGATTTTGTCAAGGCAGCGAGCCCTTTTACCTTCATGTGAGCTCGTGATTCAATTCACATGAATGTACGTGAATTCTGACTGAACCACAGAGGGAATATATTTTAAGCGATGCCGACCCCGAAGTTTTAAAACGCGTTTTCCTCACCAAGACATGGGAATGAAGTCGCTTCGCTGCACCGCACTCTAAACGCGTTCGCACAAGGAAATaacctgtttttttaaagactcGTCTACCGAAGGGATTAATCATGTCCAAGACgctgaaaaagaagaaacactGGTCCAGTAAAGTGCAGGAATGCGCCGTTTCGTGGGGTAACGCCGGGGAGCTCAGCGTCGTGCTGGAGATACGCGGCGGAGCCGAGCACGGAGAGTTCCCGCACCTGGGACAGGTGTTGTCGGACGCCTTAGCGTGCCATGTCGGCAGGCTACCTGGTCCCGGAGACGTGCTTCTGGAGGTGAACGGCACGCCTGTCAGCGGACTGACAAACCGAGACACCCTCGCCGTCATCCGCCACTTTCGCGAACCCCTCCGTCTGAAGACCGTAAAGCCAGGTAAGGTGTTAAACACGGATCTGCGTCATTACCTCAGCCTGCAGTTCCAGAAAGGCTCTTTGGACCACAAGCTCCAGCAGGTGATCAGAGATAACCTGTACCTGCGCACCATTCCCTGTACCACGAGGCAGCCTCGCGAAGGGGAGGTTCCAGGAGTGGACTATAATTTCATCAGCGTGGGGGAGTTTCGTGTGCTGGAGGAGAGCGGCCTGCTACTGGAGAGTGGAACGTATGACGgtAATTACTATGGCACTCCAAAGCCTCCAGCAGAGCCCAGCCCAGTGCAGCCTGACCTGGTGGACCAGGTTCTGTTTGACGAGGAGTTTGACGCAGAGGTCCAGCGCAAACGCACCACGTCTGTCAGCAAAATGGACAGAAAAGACAGCGCAGCtcctgaggaagaggaggaggatgagagACCACCCATGGTCAACGGGCTCACAGAACACAAGGAGGGACCGGAGTGGAGGAAAGCTGTGCCCAGCTACACGCAGTCCAGCAGCAACATGGACTTCCGCAACTGGAACACGCTGCCACGTGACGAGAGCCAGGAGCCTCTGCCCAAGAACTGGGAGATGGCCTATACGGAGACAGGCATGGTCTACTTTATAGATCATAATACCAAGACCACGACCTGGCTCGACCCACGACTGGCGAAGAAAGCCAAGCCTCCTGAAAAATGCGAGGATGGAGAGCTTCCATATGGCTGGGAGAAGATTGAGGACCCGCAGTATGGGACTTATTATGTGGACCACATCAACCAGAAGACTCAGTTTGAGAATCCAGTGCAGGAAGCCAAGAAGAAACTCAGCCAGGACACATCTCCAACCAGTCAGCCAATAGCAGCGGCCGCAGGAGCAGTACCAACGCCCTTAAATGAAACTGGTTTAAGGGGATTCACACGGGACCCATCTCAGCTGCAGGGTGCTATTTTGCGCACAACTCTGAGGAAGAGTCCTCAGGGCTTTGGTTTCACCATCATCGGTGGAGACCGACCAGATGAATTCCTTCAAGTGAAGAACGTCCTGAGAGACGGACCCGCCGCACACGATAACAAAATCGCTTCAGGTGATGTTATAGTGGACATAAATGGTACATGCGTGCTGGGTAAGACCCATGCAGATGTGGTCCAGATGTTCCAGTCCATTCCTGTGAATCAGTATGTGGATATGGTCCTGTGCCGTGGATACCCGCTGCCAGAGGACACTAACTCCAGCGAAGAAGGCACAGGCGACATATTAACTGCAATCCCGGGAATGGACGGGCAGCCCATTCATTCAGACGTGCAGGACCTCCACTACATGACCACAGATGGCAGGCATCCAGCTGCAGCTGCAGCAATGCCCAACGGACGCTACCCAGAGGCGGCAGAGACCACCCTGCTGCAGCCCGAGCTGGTCAGCGTGCCTTTGGTAAAGGGGCCGAGCGGATTTGGCTTTGCCATCGCTGACTGTCCGCTGGGTCAGAAGGTGAAGATGATTCTGGACGCGCAGTGGTGCCGAGGTCTGCTGAAGGGGGATGTGATAAAGGAAATTAACAGGCAGAACGTGCAAACCCTCACCCATGCGCAGGTGGTGGACATCCTCAAAGACCTGCCCATGGGCAGCGAGGTCAACGTCCTGGTGCTCAGAGGAGGTCAGACATCTCCCGTGAAGTCTCTGAAACCTATCACTCCAGCTATTCCCAGTGCCCAGAAGCAGGACATTGCCACCAGTTCCATCAGTACTGAAACTCCCAGTCCAGCTGAGCCTGGGCCCCAGTCCCTCCCCTTCCCTCCTCATGCCATCCGCTCCAACTCCCCAAAACTGGACCCGTCTGAGCTCTACCTCAAGTCTAAAGCCATGCTAGACAGCAAACCCACCAACACTAAAGAACTGGACGTGTTTATCAGGAGGAACCAGGAGACTGGATTTGGGTTCAGAGTGTTGGGTGGAGAAGGACCAGATCAGCCAGTGTACATTGGTGCCATCGTTCCTCTGGGTGCTGCAGAGAAGGATGGGCGTCTGCGGGCTGGAGATGAGCTCATCTGTATTGACGGCGTTCCCGTCAAAGGCAAATCTCACAAACAAGTTCTGGAGCTCATGACCAATGCTGCCCGCAACGGGCAGGTGATGTTGACTGTGCGCAGAAAGCTCACCTATCCAGcagaaagagagggagatgaTGGGGGTCAACCTCAAGCCCCACTTGCTCCAGTACTGGTCAACGGCTCTCCCAAACCACCCCACATCGAGGTGTCCGGCCACAGCCATCCTCAGCCCTACGACGTCACTCTTCAGCGCAAGGACAACGAGGGCTTCGGATTCGTCATCCTCACCTCTAAAAACAAGCCTCCGCCTGGAGTTATCCCGCATAAGATTGGTCGCATCATAGACGGCAGTCCCACAGACCGCTGCGGTCGGCTGAAAGTGGGTGACCGCATCTCTGCTGTGAATGGCCAGTCAATTATCGAGCTGTCCCACAATGACATCGTGCAGCTCATCAAAGAAGCTGGGAATGCGGTTACCCTCACGGTGGTGCCGGAGGAGGAACACAGCGGACCGCCGTCAGGCACTAGTTCAGCCAAGCAGAGCCCAGCCACCCAGCACAGAGCCGTGGGACAGCAGCCTGCCAGCCGAGATGACAGGAATGGTGTAGAAACGGAGGAGAGGAAGGACGCTGTGGCCCGAGCGGAGTACAAATCCCTGGCGCAGGGTGAGATGGGGACTGTCATCACCTCAGGACCAAAGCAGGGCTGTTATCCTGTGGAGTtggagagaggacagagaggtTTTGGCTTCAGTCTGAGAGGAGGGAAGGAGTATAATATGGGCCTCTTTATCCTTAGACTAGCTGACGATGGTCCGGCACTGAAAGATGGCAGAATACATGTGGGAGATCAGATCGTGGAGATCAACGGTGAACCCACGCAGGGCATTACACACACACGGGCCATTGAGCTCATCCAGGCCGGCGGAAATAAAGTGCTGCTCCTTTTAAGGCCTGGACTGGGCCTGGTGCCTGATCATAGTCTGAACTCTTCCTCCACACTGTGCTTCCACATGAAACCAGAGCATCACTAAAGGCTTCTCTGCTTTTCTTGGTCTGTCCCTAATAACTTTGACGTTAAGGACATGATGAAAGGTCCATCTGCAAACTCTCCAAGGTATTCTGCATCCAATGAGCCGTCGACACCAGCATCTCCATCCACCATCTCTCACTCCCCCGAGATGAATCCCTCTCCACCCGAGGAGCTCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233990 lncRNA downstream 10878 15210228 ~ 15338843 (-) True G157984
TU233960 lncRNA downstream 48039 15163801 ~ 15301682 (-) False LOC122328902
TU234037 lncRNA downstream 53085 15295888 ~ 15296636 (-) True G158019
TU234028 lncRNA downstream 145771 15202366 ~ 15203950 (-) True G158014
XR_006247855.1 lncRNA downstream 160083 15188148 ~ 15189638 (-) True LOC122328921
TU234059 lncRNA upstream 2100 15476487 ~ 15477769 (-) True G158024
TU234264 lncRNA upstream 129461 15603848 ~ 15607080 (-) True G158174
TU234271 lncRNA upstream 147555 15621942 ~ 15702230 (-) True LOC122329227
TU234287 lncRNA upstream 206499 15680886 ~ 15681872 (-) True G158188
XR_006247888.1 lncRNA upstream 225384 15699771 ~ 15717244 (-) False LOC122329227
XM_043224966.1 mRNA downstream 2523 15339059 ~ 15347198 (-) True LOC122328900
XM_043224995.1 mRNA downstream 25699 15316727 ~ 15324022 (-) False LOC122328911
XM_043224993.1 mRNA downstream 25699 15316727 ~ 15324022 (-) True LOC122328911
XM_043224313.1 mRNA downstream 152260 15195117 ~ 15197461 (-) True LOC122328567
XM_043224981.1 mRNA downstream 164579 15165542 ~ 15185142 (-) False LOC122328902
XM_043223970.1 mRNA upstream 4653 15479040 ~ 15490268 (-) False tmem269
XM_043223969.1 mRNA upstream 4653 15479040 ~ 15490268 (-) False tmem269
XM_043223972.1 mRNA upstream 4653 15479040 ~ 15490267 (-) False tmem269
XM_043223973.1 mRNA upstream 4653 15479040 ~ 15490266 (-) False tmem269
XM_043223971.1 mRNA upstream 4653 15479040 ~ 15486540 (-) True tmem269
TU233895 other downstream 760128 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1018937 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 2067394 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 2132313 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 3425071 11922844 ~ 11924650 (-) True G156985
TU234273 other upstream 224882 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 224882 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 533719 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 669446 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 766423 16240810 ~ 16243395 (-) True tac3a

Expression Profile