RNA id: XM_043224990.1


Basic Information

Item Value
RNA id XM_043224990.1
length 2376
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC122328908
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15078586 ~ 15092247 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGTTCACTTTCCACAGACCTGAGGGGCTGAAAAGCATCCGCCAATCTGACTCTATGGGCATAAACTTTCCATTCGTTTTTATCTGGCCATTTCACAGGTCCATCGACGCCACGTCTTTAAAAGCATAGGACTTTGCAGTTCGCTGATAAGGAATATATTCGGAGCTGTTGCCGATTTACTAAAGATGTCTATATTACCTTTCACGCCTCCGATTGTGAAGAGACTGTTGGGCTGGAAGAAGGGCGAGCAGAACGGACAGGAGGAGAAATGGTGTGAAAAGGCAGTGAAGAGTCTGGTGAAGAAGTTGAAGAAGACAGGACAGCTGGAGGAGTTGGAGAAGGCCATCACCACCCAGAATATCACCACCAAATGCATCACTATACCGAGGTCCCTGGATGGCCGCCTGCAAGTATCTCACAGAAAAGGCCTTCCCCACGTGATCTACTGCCGGCTGTGGCGCTGGCCTGACCTGCAGTCTCACCACGAGCTGCGTGCTGTAGACTTGTGTGAGTTTGCTTTCCATATGAAGAAGGATGAGGTGTGTGTTAACCCTTACCACTATCAGCGTGTAGAGACACCAGtTTTGCCTCCAGTCCTGGTTCCTCGGCATGCTGACATCCCCACAGACTTCCCTCCACTGGATGATTTCATCCCCGAGAACACCATATTCCCAGCGGGCATCGAGCCTCCGAGCAACTATATACCGgagACCCCTCCTCCGGGCTACCTGAGTGAGGATGGGGAAACCAGTGACCACCAAATGAACCACAGCATGGACACAGgcTCCCCAAACCTTTCACCCAACCCTGTCTCACCTGCCAACAGCAACCTAGATCTGCAGCCGGTAACATATTGTGAATCCGCATTTTGGTGCTCGATTTCCTACTACGAGCTGAATCAGCGTGTGGGCGAGACTTTCCACGCCTCCCAACCGTCTCTGACCGTAGATGGCTTTACGGACCCCTCTAACGCAGAGCGCTTCTGCCTGGGCCTGCTGTCCAACGTCAACCGCAATGCAGCCGTGGAGCTGACACGCAGACACATCGGCCGAGGTGTGCGTTTATATTACATCGGAGGTGAGGTGTTTGCCGAGTGCCTGAGCGACAGTGCTATTTTCGTCCAGAGTCCCAACTGTAACCAGCGGTATGGCTGGCACCCAGCCACAGTATGTAAGATTCCTCCAGGCTGTAATCTGAAGATTTTCAATAATCAGGAGTTTGCGGCTCTGTTGGCCCAATCAGTGAATCAGGGATTTGAGGCCGTGTACCAGCTCACCCGTATGTGTACCATTCGCATGAGTTTCACAAAGGCTGGGGCAGAATACAGGCGGCAGACAGTGACCAGCACCCCCTGCTGGATAGAGCTGCATCTCAACGGCCCCCTGCAGTGGCTGGACAAGGTGCTCACTCAGATGGGCTCCCCGAACCTCCGCTGCTCCAGCGTGTCATAGGACGAAAACCTCGGCCCGTTTCACGTAACCATACCCTTTCTAACGACATCCTCTATTGCTGCTGAATGCCAAGCAAACAAAAAGAGCGAAACCAAGGACAGGGGGGAGGGAGAAGGAAGACGAACACCTGCTGGACTCCTCGAGAGCGTCACTTTATCATTGACAAGATCCTAATATTTTGCTGGGGGCAAAAATAGACAAGTACAGTCGAAGCACTTTGGACAACGACACTCAAGGAGCACGGATGATATTTCTTCAGCGCGACGAGTTTGAAATGAGGCGTTCTCCTcattgtgaatttaaatgtgaTAACGAAATCTtgatttttgtccatttttgttGTGATCAAGAAGTGTATCGCACATTTAATTTGATCTGAAGGTATTACAATCTTGGGCTCTGAATATGATTGTTTAGATTAATAAACATCCTCAAAGAGTGCTTTGTTTCCACCACCTTCAGTGAAGGGGTCTTGTGTGAACTTTTACAGTATGTTTAGCCTGAAGCTAGTGCTTCGGGGAGCTGTTTGTGTGTAAGTAAATTGCACTGCGCTGGAGAGGTCAATATATAATGTGATTGCCTTTGGTCTCATATGCACGGTCGACCGGGTTTGTATACAGGAACTGAGTGTGTAGAGTTATAACAGAGGTACTTAGCCTTGATTATGGAAAGCACTTGTTTTGAAAAGCACCCAGTGATGGTTTGAACAAAAAGATAGCATTGGAAATTTGTCAGTGACAAATGCTAGTAGCTAAtagtgccatttttttttttttgaactcgATGGTTACCGTTTGAATTATGCTctgcaaatacattttgtattaagtatttttgcattataaactGAACGGAGATTGCGAAAGTATATTTTTACTGCTGCCATAGGGTACTGTAATTAAGATCCATGTCATAGATATAACA

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K23605 SMAD3; mothers against decapentaplegic homolog 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234018 lncRNA downstream 30299 15047173 ~ 15048287 (-) False LOC122328913
TU234007 lncRNA downstream 232908 14836361 ~ 14845678 (-) True G157999
XR_006247854.1 lncRNA downstream 247737 14830264 ~ 14830849 (-) True LOC122328920
TU233965 lncRNA downstream 376474 14684890 ~ 14702112 (-) False LOC122328902
TU233960 lncRNA upstream 71554 15163801 ~ 15301682 (-) False LOC122328902
XR_006247855.1 lncRNA upstream 95901 15188148 ~ 15189638 (-) True LOC122328921
TU234028 lncRNA upstream 110119 15202366 ~ 15203950 (-) True G158014
TU233990 lncRNA upstream 117981 15210228 ~ 15338843 (-) True G157984
TU234037 lncRNA upstream 203641 15295888 ~ 15296636 (-) True G158019
XM_043224998.1 mRNA downstream 4704 15049366 ~ 15073882 (-) True LOC122328916
XM_043224996.1 mRNA downstream 30242 15047152 ~ 15048344 (-) True LOC122328913
XM_043224968.1 mRNA downstream 145580 14905836 ~ 14933006 (-) True LOC122328901
XM_043225000.1 mRNA downstream 269809 14772091 ~ 14808777 (-) True LOC122328919
XM_043225338.1 mRNA downstream 354361 14717745 ~ 14724225 (-) True LOC122329128
XM_043224975.1 mRNA upstream 73295 15165542 ~ 15185151 (-) False LOC122328902
XM_043224974.1 mRNA upstream 73295 15165542 ~ 15185151 (-) False LOC122328902
XM_043224979.1 mRNA upstream 73295 15165542 ~ 15185149 (-) False LOC122328902
XM_043224978.1 mRNA upstream 73295 15165542 ~ 15185149 (-) False LOC122328902
XM_043224980.1 mRNA upstream 73295 15165542 ~ 15185146 (-) False LOC122328902
TU233895 other downstream 488993 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 747802 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 1796259 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1861178 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 3153936 11922844 ~ 11924650 (-) True G156985
XR_006247853.1 other upstream 255170 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 607022 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 607022 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 915859 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 1051586 16143833 ~ 16169834 (-) True G158288

Expression Profile