RNA id: XM_043225099.1


Basic Information

Item Value
RNA id XM_043225099.1
length 1642
RNA type mRNA
GC content 0.43
exon number 10
gene id hrct1
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17171113 ~ 17176489 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tCTGCCTTTATCAGACAACACAGCAGCTACTGACTTCTTCAGGAACAATGCCGCTCATCAGAGCTTTTGCGTTCCTTTGCCTGCTAATTTCAGTCGGTGCCCAGAGGAGTTACAGACTGACATGCTATCCTGATGTTTTAACTCAGTGCACTCGCGAGGGGCCGTGCTCTCACATCATCCTCCCCTTGACCTCCATCGATGACGACCTTTACCTCCAAAGCTTGTCGGAAAATGACAGTGATACACTTAGAAAGATGAAGGAGAGAAATCCAGCTTTGAAGATTTTACTTGGCTTGGAGGTCAAATCAtcaagGTTGGAGCTGATGTCTGCTAATGAGGCCGGTGTTGAGACTTTTGTTCAAACGGTATTGACATACTTAAAGGACAAGAGTTTAGACGGTCTGGACGTGACTTGGCTGGATGGCCCTTCTTCTGATGAATCCAGCAGAAGCACAGAGCTATTCACAAATTTGATGAAGAGTCTAAAAGGTGCGTTTGAAAAAGAAACCCAGCCTGTACTTCTGTCAGTGTCTGTACTAGAGCCTGTAGAGCACAGTGCAGTCACTTATGAGCAAACACTTTCACAGTATGTGGACTTCATCTCCGTTCTGCCTGCCGATCTCGACAAGGATGAGCTGCACATTAACAAAACAGTCCAGCACTGGCAGGACCAGCAAGTTGACCTGCAAAAGCTCAATCTTGCAATGCCGGCTTTTCAACGGCGGTCACGTCGAAGGCATCGCCACAGAGATCACCTCAAGCATGATGACATGAATACAGAGACAGGAAGGAAGGATCACATCCACGTTTTGGGCTTATACATGGGCGAATGGGTGTGTCAGGCCATTAAAAGTGGACAAGAGCAGTTCATTACTTTAACAAGTCTCTCAAATGAGCAAAGTCTTGTAGAAGAGGTGCTCCGGAAAGGCTTTGGTGGCATAGGAGTTGTCTTCATAGATGTGGACGTCTTCTATAACTCCACATGTGCGAGCATCACTCAGGAAGAACGATCGATGGTTGAATCAAAGGTGATTGTGCATTCACATCATGATCACAGACGTCGTGAGCATGGTGGTCATCATCACAGGAGAAGCCATCACCACAGCCACCACGGGCATCATCACTCTCACCTCCCTAACCGCAGCCACGGTCACCATCACCATGAACATCATCATGGCCATCGTCACCACGGTCACCGTCGTCAGCATCAGCATCACAAATAATTCCTCAAAGCAGTATACCTGATTCACTTCAGCCATactaataagaaaaaatgacTTGCAGACAAATAATTgtgcttcattgttttttaattgagtAGTGAACCTTTTTTCCGGTATTCTACCGCATAGACATTAATTAATTGAGGTTTGTTGATTACActttttggtgtgaaagggcttttacatttgctataaGTAGAACgtcttatatttaaaataatcaagcCCTGCTCGTacttaaaaaattacataaagcaAATAAcgcaaaagtattaatttttaaacgCAATTTGTTACTTTATTAGGGAGTAAcgcaatattgtaatatattaacttttttaagaGTAACTTTCTCcaacactgtgtgtgtatatatatacacacatacacatacatatacatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234861 lncRNA downstream 88429 17082207 ~ 17082684 (-) True G158587
TU234860 lncRNA downstream 88561 17082207 ~ 17082552 (-) False G158587
TU234706 lncRNA downstream 442770 16728101 ~ 16728343 (-) True G158484
TU234705 lncRNA downstream 443398 16727438 ~ 16727715 (-) True G158483
TU234703 lncRNA downstream 446710 16723931 ~ 16724403 (-) True G158481
TU234890 lncRNA upstream 114392 17289971 ~ 17291543 (-) True G158605
TU234898 lncRNA upstream 135749 17311328 ~ 17338919 (-) False G158608
TU234897 lncRNA upstream 158265 17333844 ~ 17335245 (-) True G158608
TU234920 lncRNA upstream 207763 17383342 ~ 17386554 (-) True G158628
TU234925 lncRNA upstream 218442 17394021 ~ 17395422 (-) True G158632
XM_043225103.1 mRNA downstream 163827 16832085 ~ 17007286 (-) True plxna2
XM_043225251.1 mRNA downstream 489425 16680306 ~ 16681688 (-) True LOC122329053
XM_043225250.1 mRNA downstream 493746 16674237 ~ 16677367 (-) True LOC122329052
XM_043224317.1 mRNA downstream 554774 16609478 ~ 16616339 (-) True LOC122328572
XM_043224027.1 mRNA downstream 625425 16541514 ~ 16545688 (-) True LOC122328366
XM_043225101.1 mRNA upstream 1046 17176625 ~ 17184385 (-) False slc48a1a
XM_043225100.1 mRNA upstream 1046 17176625 ~ 17179832 (-) True slc48a1a
XM_043225102.1 mRNA upstream 39020 17214599 ~ 17258164 (-) True itga5
XM_043223974.1 mRNA upstream 118599 17294178 ~ 17302565 (-) True csrnp2
XM_043225140.1 mRNA upstream 127632 17303211 ~ 17315390 (-) False tfcp2
TU234495 other downstream 812408 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 927718 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 1001279 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 1162198 16008106 ~ 16008915 (-) True G158231
TU234274 other downstream 1453863 15699269 ~ 15717250 (-) False LOC122329227
TU234864 other upstream 1073 17176652 ~ 17179779 (-) False slc48a1a
TU234899 other upstream 163688 17339267 ~ 17343385 (-) True G158609
TU235255 other upstream 870359 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 1056064 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 1571812 18747391 ~ 18754712 (-) True G159076

Expression Profile