RNA id: XM_043225104.1


Basic Information

Item Value
RNA id XM_043225104.1
length 1675
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC122328974
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17773405 ~ 17777920 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gTATTCTAACGTGATTGGATTTAAGGCCAGGTTAAAAATACTTGTGGTAATACAGTGCAAAAATAATCAATATCGTTCATTAATACAGCATGCATACCGTAAATTCATTcctagtaggagtagtatgggAGTATATGATTGTGAGGAACGGCACACAGAGTCCAGCCCCTCGTCCCGTCGCGCCAGGGTCGAAAGTTCACGTTCAATCGCCCGAACTAATAACGACAGATAAAACTTCCCGGTCAAACTAACCTCTGTTGCGTCGCATTTATCGCTAATTATCGCAGGGGCTGATTTCACGTCGAGCTGATCATGCTTTCATCGTCCAAAATCGTAAGTAAAGCTCGTGCGGTCTTTAGCGCGCCTCGGGTTTTTAAAGCGTGCGCTTCTCAGGGAGTCCTGAAACGGGGGAAGTTTGAGGGGGAGCCGTGCGACGCGTCCCGCACGCGGCGGATGTCCGACGGCTTCAACGTCCCGCCGAGCGCGGAGTTCGTGGCGAGGGTCAGCGGAATCGCGACTATGTGCAAGTTACCGTTTCAGAAAACGGCGGACGGGTTGGACGCGGCGTTCGTCGGGGTTCCTATCGACACCGGAACTTCCAACCGTCCCGGCGCGAGATTCGGTCCGAGGCACATCAGGGCAGAATCCGCTATGATCAGGTTGTACAACGGCTGGACCAGAGCGGCCCCATACGAATCAATAAAGGTGGCGGACATCGGCGACATTAACGTCAACCTCTTTGACCTGAAGGACACCTGCAAAAAAATCCGAGAGGCTTATCGTGAAATTGTGGCCACCGGCTGCATCCCCCTCACACTGGGAGGTGATCATACGATTGCGTACCCAATCCTGCAAGCCGTTGCTGAGAGACATGGACCGGTGGGCCTGATACACGTGGACGCCCATGCAGACACTAGCGACATGATCCTGGGGGAGAAAATTGGTCACGGGACCCCTTTCAGGCGCTGCGTGGACGAGGGGCTCCTGGACTGCAAGAGGGTCGTCCAGATCGGTCTCAGAGGCTCGGGTTATTCTCCAGATAATTATGAGTGGAGCCGAGCACAGGGTTTCCGTGTAGTGGAGGCTGTGGAGTGCTGGCACAAATCTCTCGTCCCACTCATGGAGGAGGTTCGCTCACAGATGGGCGGGCCGGTCTATCTCAGCTTTGACATAGACAGTCTGGACCCCGCTTTTGCTCCAGGGACAGGAACACCCGAGATTGCTGGCCTCACACCCATACAGGGTCTGGAAATCATTCGAGGTTGCCGAGGTCTTAATCTTGTGGGTTGTGATTTAGTTGAGGTTTCTCCACCTTACGACACCACAGGAAACACTGCTTTGACTGGGGCTAACCTCCTTTTTGAGATGATGTGTGTCCTTCCAAAAGTcaaatattattgatttttttacgTTTTCGTTAAGACTTTTGCGAAATGTCTCAAATAATTGCACAGTGACATACATGATTTATGTACAaaatcagtattattattattttcagcaaCAAATACCTTTATTTGGatgaaaacagtgaaaaaaaaatcatatcgtGGATGAAGAAACATAAACCTcgggaatataaaaaaaaaatcacaaaattatgaaaataaaacatttgaggTTTATTTGATAATACAGTTTTTGAACCGATTAATAAATAGATTACATAACGTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines molecular_function

KEGG:

id description
K01480 speB; agmatinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235009 lncRNA downstream 24903 17746530 ~ 17748502 (-) True G158706
TU234910 lncRNA downstream 351100 17413703 ~ 17422305 (-) False coq10a
TU234925 lncRNA downstream 377983 17394021 ~ 17395422 (-) True G158632
TU234920 lncRNA downstream 386851 17383342 ~ 17386554 (-) True G158628
TU234898 lncRNA downstream 434486 17311328 ~ 17338919 (-) False G158608
XR_006247788.1 lncRNA upstream 21922 17799842 ~ 17844102 (-) True LOC122328377
TU235093 lncRNA upstream 166005 17943925 ~ 17944160 (-) True G158774
TU235252 lncRNA upstream 221913 17999833 ~ 18001690 (-) True G158887
TU235259 lncRNA upstream 234206 18012126 ~ 18015877 (-) True G158892
TU235247 lncRNA upstream 263990 18041910 ~ 18043476 (-) True G158882
XM_043225107.1 mRNA downstream 335392 17433732 ~ 17438013 (-) True tmed4
XM_043224254.1 mRNA downstream 350888 17417622 ~ 17422517 (-) True coq10a
XM_043225030.1 mRNA downstream 412021 17354147 ~ 17361384 (-) True racgap1
XM_043225031.1 mRNA downstream 422457 17344102 ~ 17350948 (-) True bin2a
XM_043225289.1 mRNA downstream 442518 17316628 ~ 17330887 (-) True pou6f1
XM_043225105.1 mRNA upstream 554 17778474 ~ 17784124 (-) True pink1
XM_043224320.1 mRNA upstream 6795 17784715 ~ 17786242 (-) True LOC122328575
XM_043224107.1 mRNA upstream 9677 17787597 ~ 17788930 (-) True LOC122328417
XM_043224106.1 mRNA upstream 11060 17788980 ~ 17796430 (-) True LOC122328416
XM_043224047.1 mRNA upstream 56923 17834843 ~ 17836972 (-) True fam43b
TU234899 other downstream 430020 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 593626 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1414700 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 1530010 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 1603571 16143833 ~ 16169834 (-) True G158288
TU235255 other upstream 268018 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 453723 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 969471 18747391 ~ 18754712 (-) True G159076

Expression Profile