RNA id: XM_043225144.1


Basic Information

Item Value
RNA id XM_043225144.1
length 2466
RNA type mRNA
GC content 0.43
exon number 6
gene id tspan31
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18065270 ~ 18070963 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATTCGAACGTCGCCACCTCTCGCCACAAGAGAAGAAGAACGGCGTCTAGCCTACTCACAGCAGCGAAAACAACATCTGTAGCACATCGTTTCGTCTCACCGGTAAATGCCTGAAGAGTCAACATGGTTTGCGGAGGATTTACGTGCTCGAAAAACGCCCTCTGTTCGCTAAATGTAGTTTATATGCTGGTGGGTCTCCTGTTGATTGTGGTAGCAGCATGGGGAAAAGGCTTTGGCATTGTCTCCAGCATCCACATCATCGGCGGCGTCATTGCCGTGGGCTTCTTTCTACTGCTGATCGCCATTGTAGGACTCATTGGAGCCGTCCATCATCACCAAGTCATGCTTTTCTTTTACATGGTCATTCTCTTCATTGTGTTCCTCTTCCAGTTTGGAGTTTCCTGTTCTTGTCTGGCCATGAACCAGGGTCAACAGGAGAAGCTGCTGAACTCATCCTGGGGAATAATGAGTAACGACACAAGAATCAGCCTTGAGAAGAAGCTGGACTGCTGTGGCCTGTTCAACAATTCGCAGAGCCAGGCAGTGTTTGCAGGAGACTTACCCCTCTGCGATTCTCCATGCCTAAAAAATAAGCTCTGCCTCACTTGTGGTGAAAAGATGCTCCAACATTCATCAGAGGCTTTGAAGATCCTCGGAGGAGTCGGCCTCTTTTTCAGCTTTACAGAGATCTTAGGAGTTTGGCTGGCCATGCGCTACAGGAACCAAAAGGACCCGAGAGCGAACCCCAGTGCATTCTTATAGTCTCTCAGACCGTCTGTCCTGAACTATGTTTAGTGTAGTCCAGCTATTCCAGTTCCCCTTTGCACAGGTCGAATGGAGCGCACCAAGAgacatttaaagcattaaacGCAGAACACGACCACTGATCCCCGCAACAAACTCCCATCTACACACCTGGATCACACTAGATACGAACGCACATGCAAACACATCTATTTTAGCGATAGATCTGACCCATTTTCCACACAAGGTCTGCAGAGGGCTAATTTAAACCAGCAGGAGGAGGTATCATGTATGATAGGATGCTCGTTCCGGCACTTCCCCCATCCTTGATGTGAGAAACTCTTCCTGTTTTCTGTATGCAAACCGAAAATCTGCAATGTAAAGTCATCGATGTCTGCATGTTCATAGCCTCAGTTTCTCGTGACACACTCACTTATGTACACACAACCAGGTATGATGTGCCCAAATAGTCCCTGTAGTTTCAGTGTAACGGAAAGTTAACCCCGCATAAACTATGGTAATGTTTAGTATCGGTTAGTCAAGGTGAACTACTCTGTCACGTATCTCCCAGGAAAATCACGTCAGGTGCACTCCGAACGAGCGCAGACCTGAAACATGCCTGTGTTTTGTGCAATGCTATATGAAGTCCGTCTCGATGAGGTGACTGGTCCGGCCTATGGGACATTAGTTTAGGAATTAGACGTAGAGcgtgaatatttaaaaacatttgtgtaacTGAGCCATGTGAATGGGAGGATTTCCCCCGCCGATGGACTGCTGTTGTACATAGTCTTTACCGCGACAGGGTTGATGTTCAGCGAATCTTTTCCATCCTTATTTAAACCACAGAGATCCTCCCGTCTCAGCCGGGTCTCGCTATTCTCACTGGACTTCTTAAGTTCTCCATTTCCTCTAAAGCTTAGTATTACTCAtggattttgtattttaatatcttatgatttttttttttttttttttttttttttgtgtgtgtgtggatgtttgTTGAAATAATCTCGGTGTGCCATTTACTCAGTTGGTTTAAACCAGGTACTCATGCACTAACTTGCGGTTTTTATCATTTGCAATCATGCATCGCTTCTTTTCAGCTATTTTATAAGTACTAGTACTAACGGCACCAGGTCCATATTTTTAGCACTGAATACCGGGCCATTTCAGTTAAATccttcttattttgtgttttgccaAACCtcttggttttttttgtcattgcgcttatgatttttttttttcttcttgttttgtgCTAATAGTGTTAAGTTGCCATTAAAGTGTGAGTTTTTTGCAATGTTGATCATTGTTATTGTAGAGGATAGATCATTTGTAATGACCTTTtgtgcacacacatatgttaATTCCATGTTCCCGTGTTATGTgttaatttgtttattcatattaatagtGGAACATACAGGCTAATACTCACAGTCTTAACTGCTTTAGTTTCTGCCCCACGTGACTGAGAAAATGGGAACACTGAACCATCACTCAGTACAGCTTAAATGTGTTCTGCTTCACTTGGTCATGGTATTATGAGTGTGTTTCACTGATGGATTTTGAAGAGGTGAAATCAATGTCTGTGCTATAGTAGTTATTTATTGCCGCAGTACCCGACTCGGTGAGCTGTAAGCACCATTTTCCCTGGATTTGCCTTGTATTTTTGAAACTGACTTTTCCAATTAAATATTCTTAGATCAATA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17356 TSPAN13_31; tetraspanin-13/31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235247 lncRNA downstream 21794 18041910 ~ 18043476 (-) True G158882
TU235259 lncRNA downstream 49393 18012126 ~ 18015877 (-) True G158892
TU235252 lncRNA downstream 63580 17999833 ~ 18001690 (-) True G158887
TU235093 lncRNA downstream 121110 17943925 ~ 17944160 (-) True G158774
XR_006247788.1 lncRNA downstream 221168 17799842 ~ 17844102 (-) True LOC122328377
TU235329 lncRNA upstream 122007 18192970 ~ 18193557 (-) True G158947
TU235328 lncRNA upstream 123289 18194252 ~ 18194524 (-) True G158946
TU235338 lncRNA upstream 124436 18195399 ~ 18196369 (-) True G158948
TU235339 lncRNA upstream 124854 18195817 ~ 18196251 (-) False G158948
TU235340 lncRNA upstream 129804 18200767 ~ 18200966 (-) True G158949
XM_043223966.1 mRNA downstream 6531 18045926 ~ 18058739 (-) True march9
XM_043225425.1 mRNA downstream 127691 17935574 ~ 17937579 (-) True LOC122329235
XM_043225426.1 mRNA downstream 127693 17935574 ~ 17937577 (-) False LOC122329235
XM_043225389.1 mRNA downstream 139066 17924639 ~ 17926204 (-) True LOC122329192
XM_043225388.1 mRNA downstream 140767 17922587 ~ 17924503 (-) True ubxn10
XM_043225198.1 mRNA upstream 31348 18102311 ~ 18105120 (-) True gpr182
XM_043224710.1 mRNA upstream 36922 18107885 ~ 18116326 (-) True pip4k2ca
XM_043224711.1 mRNA upstream 49332 18120295 ~ 18123704 (-) True igfbp6b
XM_043224702.1 mRNA upstream 91497 18162460 ~ 18177490 (-) True lima1a
XM_043224588.1 mRNA upstream 143615 18214578 ~ 18220380 (-) True copz1
TU235255 other downstream 17392 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 721885 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 885491 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 1706565 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 1821875 16240810 ~ 16243395 (-) True tac3a
XR_006247822.1 other upstream 160680 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 676428 18747391 ~ 18754712 (-) True G159076

Expression Profile