RNA id: XM_043225280.1


Basic Information

Item Value
RNA id XM_043225280.1
length 948
RNA type mRNA
GC content 0.52
exon number 2
gene id hoxc13a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18400997 ~ 18403756 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGACGACTTCGCTGGTCCTGCATCCACGCTGGGCGGACACCTTGATGTACGTGTATGAAAAAAGCCCGaatgaaaataatcagaataaaagCCAAATTATGGAAGGATTGAGCGGGAATTGCCCTGCGACTCATTGCAGGGAACTGATCTCACACCCCGCGCTGGGGCGGCATTCCGGCACCATAGCGACTCACCAGGGATCCGTGTACTCGGATATATCTTCCCCAGAAACCGGGCGACAGTGCCCCGCTCCACAGACGTCATCTAGCGCCTCTCTGAGTTACGGCTACCCCTTTGGAAACCCCTACTACGGTTGCAGATTGTCTCACTCGCACAACGTGAACTTGCAGCAGAAACCGTGTTCGTACCATCCCGCAGAAAAATACGCCGAGACGAGCAGCGCCTTGCCCGCGGAGGAGCTCTCCAGCAGGGCGAAAGAGTTCGCGTTCTACCCGAGTTTTGCCAGCTCGTACCAGGCGGTTCCAGGATATCTAGACATGTCGGTGGTCCCCAGTATTAGCGCGCATCCCGAGCCACGTCACGATGCATTGATCCCCATGGAGGGCTATCAACACTGGGCTCTGTCGAACGGCTGGGATGGGCAGGTGTACTGTTCAAAGGAGCAAACGCAGTCTTCTCATCTTTGGAAGTCTCCGTTTCCAGatgttGTTCCGTTGCAGCCAGAAGTCAGCAGTTATCGTCGAGGGCGCAAAAAGCGCGTTCCCTACACCAAGATACAACTAAAGGAACTGGAAAAAGAGTACGCAGCGAGCAAGTTTATCACCAAAGACAAGAGACGACGCATCTCCGCGACGACCAACCTCTCAGAACGCCAAGTTACTATTTGGTTCCAGAACCGCAGAGTGAAGGAGAAGAAGTTTGTCAGTAAATCCAAGACTAATAATCACATGCATACTTGATGCATGTTtcgtactttttttttcttc

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0031101 fin regeneration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09298 HOX_13; homeobox protein HoxA/C/D13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235355 lncRNA downstream 50650 18342361 ~ 18350347 (-) False hoxc6a
TU235357 lncRNA downstream 98422 18296244 ~ 18302575 (-) False hoxc1a
TU235346 lncRNA downstream 154170 18244923 ~ 18246827 (-) True G158955
TU235344 lncRNA downstream 162465 18237897 ~ 18238532 (-) True G158953
TU235343 lncRNA downstream 194539 18206143 ~ 18206458 (-) True G158952
XR_006247816.1 lncRNA upstream 18103 18421859 ~ 18456506 (-) True LOC122328626
TU235396 lncRNA upstream 36894 18440650 ~ 18442479 (-) True G158984
TU235375 lncRNA upstream 155664 18559420 ~ 18563142 (-) False G158980
TU235376 lncRNA upstream 155664 18559420 ~ 18563142 (-) True G158980
XR_006247881.1 lncRNA upstream 209920 18613676 ~ 18615145 (-) True LOC122329081
XM_043225305.1 mRNA downstream 7478 18391950 ~ 18393519 (-) False hoxc12a
XM_043225306.1 mRNA downstream 7478 18391950 ~ 18393519 (-) True hoxc12a
XM_043224261.1 mRNA downstream 18067 18379954 ~ 18382930 (-) True hoxc11a
XM_043224330.1 mRNA downstream 24834 18356198 ~ 18376163 (-) True hoxc10a
XM_043224331.1 mRNA downstream 34757 18361054 ~ 18366240 (-) True hoxc9a
XM_043224736.1 mRNA upstream 53169 18456925 ~ 18507741 (-) False rarga
XM_043224737.1 mRNA upstream 53169 18456925 ~ 18507405 (-) False rarga
XM_043224738.1 mRNA upstream 53169 18456925 ~ 18478459 (-) True rarga
XM_043225347.1 mRNA upstream 131956 18535712 ~ 18545493 (-) True gdap1l1
XM_043225346.1 mRNA upstream 131956 18535712 ~ 18545492 (-) False gdap1l1
XR_006247822.1 other downstream 165461 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 353119 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1057612 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1221218 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2042292 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 343635 18747391 ~ 18754712 (-) True G159076

Expression Profile