RNA id: XM_043239006.1


Basic Information

Item Value
RNA id XM_043239006.1
length 4264
RNA type mRNA
GC content 0.49
exon number 18
gene id hk2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2759355 ~ 2812420 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATAATGAAATTTTGGTAATGCTTTATTATGAAATACACCCTGAAGAGACGTGCCTAGATGCACATCTACACTGGGTCAGATTACACAGAGAATATACGGATTATTAGAGCTGAATTTATCATTCATTCTTCaccaaaaatgttacaaatatctGTCCTTTCTTTAATCAAGAATCAGTCAGCAAAATGGCTCGTCTTGTtgctttctgaaaaacaaacatcaataaaaatacCACGCGAAtttatgttcaaaaatacattatataattaactgcatctaaaataaaagattttgtgttcataatatatctgtgtatatttattatgtaaattttgCTAACATAAATTTAATATGCAAGTTATTatgcatgaatacatttttttattttatttttatattaaatatatttttcatttgacagaactaatatatatatatatattttttttctttcttaaattaggcttatttattattattattattattattattatttatttcacaaaaaggGAAAGTGTGCTTTAATCAACATTCATCAGTGTAGTCAGACTTAGATTAGTTAGGCCACGTTTAGTTTTTCTGCTTAAACTTAAGTtgcttttgatgtttttaagagCACTATGAATTCTTAATCTTACTGCAGCCCAGCCCAAATATAcaatgcattcatgcatttcatGTAAAAACATCATAGAAAACTCTCACTGTGCTTGAATTGAGCTTCcagtgacaaaaataaaaaaatatataataataaaaaacattatttaaagtgtttagGCAAGGccatacacacataaaacagccattaaaataatcatcacaacaataaaaaccagaaataaaaatagaaatacagTACTTAAACACACAACATAGTATTGTACGTGTGGAGGTTTTTGAGAGTCTGGGTGGGGGCCGTCCCAAAGTCTCCAAAGTCTCGCACGCCTTCTTCCTGGCCAATCAGCGGCGAGAATCTCCGTGACGCAGGCCTACTCAAACGACTAGTGCGTGAAGAGGGAGGAATTAATAGTGACATCATTTCGCAGCATCACCGTACCGGATAGAGCAAGTCCAAGAAAGAGTTTGAGAAACTCGAAGAACATGATCAGACGCCAAAAGTGACTTACGATCAGCCGAAGACACACCTGACGAGTTTAAGAGAGCCAGAGAAGACGGAAGACGATGATCGCGTCTCACTTACTCGCGTACTACTTCACCGAGCTCCACCACGACCACGTCCAGAACGTGGATAAGTACCTGTATCACCTGCGACTGTCCGATGAGAACCTGATGGACGTGTCCAAGCGCTTCAGGAGAGAGATGGATAAAGGACTGGGCCGAGACACTAACCTGACCGCGTCCGTCAAGATGCTGCCCACCTTCGTCCGCTCCACGCCGGACGGCACAGaAACGGGAGACTTTCTCGCTCTAGACCTGGGGGGAACTAATTTCCGGGTTCTGCTCGTTCGAGTGTCCAGTAACGGCAAGCAGACGGTGGAGATGGAGAACCAGATCTACGCCATTCCTGAGAACATCATGAGAGGCAGCGGCTCCGAGCTCTTCGATCACATAGCTGAATGCTTGGCTAATTTCCTTGAGAAATTGGGCATCAAAGACAAGAAGCTGCCTCTTGGCTTTACCTTTTCTTTTCCGTGCCAGCAGACCAAACTAGATGAGAGTTTTCTGGTGTCTTGGACCAAAGGCTTTAAGGCGAGTGGAGTGGAGGGACGAGATGTTGTGGGCCTGTTGAGAAAAGCCATCAAGAAGAGAGGAGACTTTGACATCGACATTGTGGCTGTGATCAATGACACCGTGGGCACCATGATGACCTGTGGCTACGACGACCATCACTGTGAGATCGGCCTCATCGTCGGGACGGGCACCAACGCGTGCTACATGGAGGAGATGCGTCACCTGGAGCTGGTGGACGGTGATGAAGGCCGAATGTGTGTGAACATGGAGTGGGGTGCGTTCGGAGATGACGGGGCCCTGGACGACATCCGCACCGACTTCGACCGGGAGATCGACGCCGGCTCCCTCAACCCCGGAAAACAGCTGTTCGAGAAGATGATCAGCGGGATGTACATGGGCGAGCTGGTCAGACTCATCCTGGTCAAGATGACCAAAGACGGCCTGCTTTTCCAGGGACACACCACTCCGGATCTGCTCACCACCGGCCACTTCCAGACCTCCTTCGTCTCTGTCATCGAAAACAACAAGAACAACGAGGGTCTGGTGAGCGCCGAGCGGGTTTTGAAAGGCCTGGGTCTGGACCCGTCTCCGGAGGACTGTGTGGTCGCTCAGAGAGTGTGTCAGATCGTCTCTACTCGAGCGGCTCATCTCTGTGCAGCTTCGCTCGCCGCCGTCCTGCGGCAGATCCGTGATAATAAAGCTGCGGAGAGACTGCGCACCACCATCGGCGTGGACGGGTCCGTCTACAAAAACCACCCCCAGTTTGCGCGGCGGCTGAATAAGATGGTGAGGTTGTTGGTGCCGGACTGTGACGTGCGTTTCTTGCGCTCGGAGGACGGCAGCGGTAAAGGGGCAGCGATGGTCACTGCCGTGGCGTACCGGTTAGCGAAGCAGCACGCCGAGCGCCAGAGAATCCTCGACACGCTCCGCCTCGATCGAGATCAGCTGCTGGGGGTGAAGAGGAGGATGGAGGAGGAGATGAAGAAAGGCTTGGCTAAAGAAACTCACTCCAAGGCCGCTGTAAAAATGCTGCCCGCCTTTGTGCGCTCCATGCCTGATGGAacagAGCGTGGAGACTTCTTGGCTCTGGATCTGGGCGGCACAAACTTCAGGGTGCTGTTGGTGCGCGTTGGAAGCGGGAAAAGACGGAGCGTGGAGATGCATAATAAGATCTACACCATCCCTCAAGACATCACTCAGGGCACCGGCGAGGAGTTATTCGATCACATAGTGCACTGCATTGCTGACTTCCTGGAGTATATGGGTATGAAGGGAGCGTCGCTGCCGCTGGGCTTCACCTTCTCGTTTCCCTGTCATCAGACCCGACTGGAtcagGGCGTCTTGATAAAGTGGACGAAGGGCTTCAAGGCCTCGGGCTGTGAAGGAGAGGATGTGGCCACGCTGCTCAAAGACGCCATCCACCGCAGTGAGGAGTTTGATCTGGACGTGGTGGCGGTGGTGAATGACACCGTGGGCACCATGATGACCTGTGGCTACGAGGACCCTCAGTGTGAAGTGGGGCTCATTGTCGGCACGGGGACTAATGCGTGTTACATGGAGGAGATGTCCAACGTGGAGCTGGTGGATGGAGATCAGGGCCGTATGTGTGTGAACATGGAGTGGGGGGCGTTCGGAGACGACGGCGAGCTGGATGACGTCTGCACAGAGTTTGATCGAGCCGTAGATGACCAGTCCACTTATCCTGGCAAACAGCGATACGAGAAGATGATCAGCGGCATGTATCTGGGAGAGATCGTCAGGAACGTTCTCCTGGACTTCACTGCCAAAGGCCTGCTCTTCCGTGGCAAACTTTCAGAAAGACTGAAAACACGCGGAATCTTCGAAACCAAGTTCCTGTCACAGATCgagagCGACCGCCTGGCTCTGAGGCAGGTGCGCTCCGTCCTGCAGCACCTGGGTCTGACCAGCAGCACGTGTGACGACAGCATTCTGGTGAAGGAGGTCTGCAGCGTGGTGTCCAGACGAGCGGCGCAGCTCTGCGGAGCCGGTCTCTCCGCTGTGGTGGACAAGATACGAGTGAACCGCGGCCTGGAGAAGCTCAGCATCACCGTGGGAGTGGACGGCACGCTCTACAAACTCCACCCGCACTTCGCCACCATCATGAGGGAAACCTTACGAGACCTGGCGCCCGCCTGCGAGGTCACTCTCGTCCAATCAGAAGACGGCAGCGGGAAAGGTGCCGCCCTCATCACGGCCGTGGCCTGTCGGTTAAGAGATGCTCGAAAGTAGAGACTGCACAAAATAACGAGGGGGATGTTATACACTGAGCTTCCagatattcttttcttttttccgcCGCAGTGTGACCTTACTGAAACAGCACTCCTGTCTGCAAACGAATGTAtctttgttatttatttctgctttagGTCATGCATTGCAGGGATTGGTGGAGGATAGTTTGTAGAAAAAGGgtacaaaaaccaaaacaaagaaCGCTGAAGCAGAACAAAAACTATTAACtgttatatgtatttgtattgttaCTGATTTGAATTACTGTACCGtctgaaaaaaagcacaaagagATTTTATTCACCTTG

Function

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0051156 glucose 6-phosphate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0005829 cytosol cellular_component
GO:0005524 ATP binding molecular_function
GO:0008865 fructokinase activity molecular_function
GO:0004340 glucokinase activity molecular_function
GO:0019158 mannokinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48271 lncRNA upstream 118266 2627084 ~ 2641100 (+) False LOC122345783
TU48269 lncRNA upstream 149765 2608216 ~ 2609601 (+) True G32770
TU48244 lncRNA upstream 159727 2598250 ~ 2599639 (+) True G32749
TU48260 lncRNA upstream 179583 2578586 ~ 2579783 (+) True G32765
TU48229 lncRNA upstream 338535 2418377 ~ 2420831 (+) True G32737
TU48303 lncRNA downstream 54883 2866166 ~ 2867373 (+) True G32798
TU48332 lncRNA downstream 136810 2948093 ~ 3021585 (+) False G32819
TU48326 lncRNA downstream 136840 2948123 ~ 3021816 (+) False G32819
TU48331 lncRNA downstream 136840 2948123 ~ 3024488 (+) False G32819
TU48327 lncRNA downstream 137055 2948338 ~ 3024488 (+) True G32819
XM_043240245.1 mRNA upstream 33942 2717013 ~ 2725424 (+) True LOC122345789
XM_043240235.1 mRNA upstream 110005 2639156 ~ 2649361 (+) True LOC122345783
XM_043239485.1 mRNA upstream 227773 2528502 ~ 2531593 (+) True LOC122345384
XM_043239486.1 mRNA upstream 227773 2528575 ~ 2531593 (+) False LOC122345384
XM_043239537.1 mRNA upstream 482332 2270486 ~ 2277034 (+) False LOC122345419
XM_043239954.1 mRNA downstream 517517 3328800 ~ 3343070 (+) True tbx1
XM_043239955.1 mRNA downstream 517517 3328800 ~ 3343070 (+) False tbx1
XM_043238407.1 mRNA downstream 606621 3417904 ~ 3422144 (+) True pebp1
XM_043238405.1 mRNA downstream 685966 3497249 ~ 3505203 (+) False suds3
XM_043238404.1 mRNA downstream 685969 3497252 ~ 3505203 (+) True suds3
TU48185 other upstream 491172 2265145 ~ 2268194 (+) True G32706
TU48087 other upstream 740907 2010411 ~ 2018459 (+) False LOC122345711
TU48080 other upstream 854078 1901458 ~ 1905288 (+) False LOC122346050
TU48056 other upstream 916353 1835148 ~ 1843013 (+) True G32620
TU48046 other upstream 933252 1822654 ~ 1826114 (+) True G32611
TU48610 other downstream 793903 3605186 ~ 4144396 (+) False G33015
TU48613 other downstream 793903 3605186 ~ 4144396 (+) True G33015
TU48849 other downstream 1811224 4622507 ~ 4623060 (+) True G33174
TU49128 other downstream 2793050 5604333 ~ 5649885 (+) False G33355
TU49131 other downstream 2793050 5604333 ~ 5649885 (+) True G33355

Expression Profile