RNA id: XM_043240563.1


Basic Information

Item Value
RNA id XM_043240563.1
length 2150
RNA type mRNA
GC content 0.42
exon number 12
gene id sec14l8
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1806950 ~ 1820557 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACACGAGACATCACTGAGCGCTCGCGGTCTATCAGACTCGAGCTGATTTCTAGACAGTTATTCGTGGTGTACTCGTGGCGACATGAGCGGAAGAGTCGGAGATCTGAGCGTGAAACAAGCCGAAGCTTTGGCCCAGTTTCGAGAGAAAGTTAAGGATATTCTACCCCAGTGTCCATCCCAGAGTGACCACTTTCTGCTTCGATGGCTGAGAGCCAGAAATTTCAATCTTCAGAAAGCCGAGGCCATGCTGCGCAAGCATATGGAATTTAGGAAACACATGAAAGTTGACACCATCCTTACGGAGTGGCAGGTGCCAGAGGTAATAGACAAGTATCTGTCTGGTGGCATGTGTGGCCATGACCGTGAAGGGAGCCCCGTCTGGTACGATGTCATCGGGCCTTTGGACCCTAAGGGTCTGATGCATTCGGCGTCTAAGCAGGACTTAATCAAGTCTAAAGTCAGGGACTGTGAGATTCTGCAGAAAGAGTGCGACCTACAGAGTCAACGGcTGGGTAGGAACATTGAGTCCATTACTATGGTTTATGACTGTGAAGGTCTGGGAATGAAGCACTTATATAAGCCTGCTATAGAGACTTACGGagagGTTCTCACTATGTTTGAAGACAACTATCCAGAGGGACTCAAGAAGTTATTTGTCATTAAAGCACCCAAACTGTTTCCTGTGGCTTACAATCTGGTGAAACATTTTTTGAGTGAGGACACTCGCCGGAAGGTCGTCGTCCTGGGATcAAACTGGCAGGAGGTTTTACAGAAATACATTGACCCTGAGGAGCTCCCAGCATTCTATGGAGGTAAACTGACCGACCCTGATGGTGACCCCAGATGTAGAACTAGGaTTACATTCGGGTCAGAGATTCCCAAGACCTACTATGTTCGAGACTCCATTAAAGTGGACTATGATGAATCTGTGACTATCGGCCGGGGCTCATCTCATCAGGTGGAATATGAGCTACTTGCACCAAACTGTGCTCTAAGatggcaATTCACCTGTGATGGCGCTGACATAGGTTTTGGTGTatataagaagaaaaagattGGAGAGTGGATGAAGGCCagtgaaatgaatgaaattgtgCCAAATCAGCGTTACAATGCGCACCTGGTGCCCGAGGACGGATCGCTCACCTGCCCTGAGCCAGGAGTGTatgTGCTGCGGTTTGACAACACATACAGCATCTTCCAGTCCAAAACGGTCAGCTTCACAGTGGAGGTCCTCCTACCTAGtcaaatcaaccaatcagaacgctAGAAATAACGGCAACAAGCAATTGATTGAGATTGTGAATCGCAAAGAAATTGAAAAGCATGACCAACTCATGgcattttatacagtatatctgCTGTACATAATGaaggaaaatattattataatgctgCTCTCGAAAAGGAGAGTGTGTACATGGATTAAACTGACTAATCGCTGCATTAAAAGTGGTTTCATCCGCTAATATATATCTGGATCTAGACTCTGATGCCAGTGTGATTCTCTTAGCTTAGCTTGGTTTAGTTAGTTTAGCTGAAGCTGTTATCAAATTGATTTATCGTGTATTAATGAAGTGTTGAGCTTATCAGTGAGCTCTGGTGTAATTACTCGACTGAAACTGTCTTGGTGTGTATTGTTGGAGCTTACCCCTCTTTATGATTGCCTTAACTCATGCTCTTGAATTTTCTGTATCTGTTTAGTTCCTTTTTATCGTGAGATAATTTAGATAATGAACTCTGAGTCTGCACGGTTTTCTCCCAGAATGTGGTAAGAGGTTACATTATTACCCACTTTTATGTTAtcagcacacacaaatatgatacaccttttgaaatattttgtttacaaagaGCGTGACTTGATACAGAGTATGACGACGTCATGGGTggcatgctttgttttaatccTCTTTAATTAATTGAACTAATTGATGTTGTAAACTTTTCATAGTAAGATTTTATACCTCAGGTCCTTGTGTTTACAGTAACAGTGCCTGTATTTGATTCCAGCAACATGTATCTGTCTTGTAAGTGATCACATTGTATTTTGTCTGATTTTTGTCTGttgattttgtaatattaatgtaatttataagtgatattgtattgattttcattaactaattaaatgtatacattagcAAAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47971 lncRNA upstream 21308 1785401 ~ 1785642 (+) True G32552
TU47959 lncRNA upstream 40060 1766596 ~ 1766890 (+) True G32542
XR_006251105.1 lncRNA upstream 41543 1762921 ~ 1765407 (+) True LOC122346170
TU47957 lncRNA upstream 44668 1762005 ~ 1762282 (+) True G32540
TU47956 lncRNA upstream 44979 1761564 ~ 1761971 (+) True G32539
TU48082 lncRNA downstream 80901 1901458 ~ 1905499 (+) True LOC122346050
TU48091 lncRNA downstream 137561 1958118 ~ 1958584 (+) True G32643
TU48092 lncRNA downstream 145622 1966179 ~ 1966378 (+) True G32644
TU48094 lncRNA downstream 170992 1991549 ~ 1993168 (+) True G32646
TU48090 lncRNA downstream 175463 1996020 ~ 1997056 (+) True G32642
XM_043240534.1 mRNA upstream 909 1796834 ~ 1806041 (+) True tctn2
XM_043240535.1 mRNA upstream 10512 1794534 ~ 1796438 (+) True ccl19a.1
XM_043240536.1 mRNA upstream 13684 1791828 ~ 1793266 (+) True ccl19a.2
XM_043239639.1 mRNA upstream 27524 1773965 ~ 1779426 (+) False ydjc
XM_043239638.1 mRNA upstream 27524 1774239 ~ 1779426 (+) True ydjc
XM_043240698.1 mRNA downstream 31050 1851607 ~ 1864706 (+) True LOC122346045
XM_043240700.1 mRNA downstream 45038 1865595 ~ 1876048 (+) True LOC122346048
XM_043239187.1 mRNA downstream 57528 1878085 ~ 1880008 (+) True LOC122345240
XM_043239188.1 mRNA downstream 61458 1882015 ~ 1892104 (+) True LOC122345241
XM_043240712.1 mRNA downstream 79038 1899595 ~ 1900425 (+) False LOC122346055
TU47965 other upstream 13707 1791860 ~ 1793243 (+) False ccl19a.2
TU47619 other upstream 691545 1112496 ~ 1115405 (+) False selenoe
TU47584 other upstream 749797 1055193 ~ 1057153 (+) True G32277
TU47246 other upstream 1355585 450192 ~ 451365 (+) False tal2
XR_006251006.1 other upstream 1375485 419246 ~ 431465 (+) False susd1
TU48046 other downstream 2097 1822654 ~ 1826114 (+) True G32611
TU48056 other downstream 14591 1835148 ~ 1843013 (+) True G32620
TU48080 other downstream 80901 1901458 ~ 1905288 (+) False LOC122346050
TU48087 other downstream 189854 2010411 ~ 2018459 (+) False LOC122345711
TU48185 other downstream 444588 2265145 ~ 2268194 (+) True G32706

Expression Profile