RNA id: TU186914



Basic Information


Item Value
RNA id TU186914
length 881
RNA type TUCP
GC content 0.40
exon number 3
gene id LOC111194217
representative False

Chromosome Information


Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 695903 ~ 717323 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


agagtgttgtGTGTACAGGAACAATGAAGTGGCATCCAAACCCGGAGCAGATCCACTGCATTCAGTCCTGTGAGCCGTTTGGTGGGGATGGCTGGTGCGACACCATCAATAACAGAGCTTACTGTCAGTACGACGGAGGAGACTGCTGCCCCTCCACTCTCTCCACCAGAAAGGTGATCCAGTTCGGGGTGGACTGTGATAATGACGAGTGTACCTGTCGAGACCCCGAGGCCGAGGAGAACAAGAACCGAGCCGAGCGTCTAGAACCCGGAGCTCCGTGAGACGACAAACTTCAGCACTGCCTCCTGGAGAAACATctcagaaaagaagaagaagaaaaatctgcaGAAcccaaaacagcagcagcagcagctccactcctccttccaatctataatctataaaatATCCACTAATATATTTTGAGAAGTTCTAACATAGCAGTAGATACGTGTAGATATGACATATTTGATCAATAtatcttaaaatcatttatattaaaaacataggAACCAAGAAAACGGACAATAAAtctttcatatatttatatatagttttataaaaaTGCTGTTCTGACTGATCCTGTAGTTTTAGATTAGCTCCACATATCCTCCTCTGTTAATAATCAATAACGTCTTCAGCAGCACAGGCCTATATATCAGtgtatatatcacaatatatgcATGAATACCAATACAGATACGCAAATACATAAACCTGAAATATACAGTCTGCTATTCCTCTCTACTGTTGTGTCCCTCAGTGTGTGGTTTTACTGATATATTATCAATAAAGTgaacacaagaaaaaaacacgAAACAAGGAATTTATAccattttttctgttattttaaatcATCATTGAGTTTCATTAaatcatca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186893 lncRNA downstream 189465 485697 ~ 506438 (-) True G138136
TU186332 lncRNA downstream 269375 426235 ~ 426528 (-) True G137721
TU186330 lncRNA downstream 275504 418761 ~ 420399 (-) True G137719
TU186320 lncRNA downstream 309546 281116 ~ 386357 (-) True G137710
TU186253 lncRNA downstream 501905 193354 ~ 193998 (-) True G137659
TU186921 lncRNA upstream 68671 775619 ~ 780533 (-) True G138160
TU186927 lncRNA upstream 151000 857948 ~ 864771 (-) True G138166
TU186966 lncRNA upstream 330919 1037867 ~ 1039082 (-) True G138195
TU186967 lncRNA upstream 334585 1041533 ~ 1044679 (-) True G138196
TU186970 lncRNA upstream 339348 1046296 ~ 1047398 (-) True G138198
XM_022677735.1 mRNA downstream 272115 286350 ~ 423788 (-) True brinp2
XM_022677732.1 mRNA downstream 519237 173241 ~ 176666 (-) True cenpl
XM_007235357.3 mRNA downstream 549698 127085 ~ 146205 (-) True eif2b3
XM_007235356.3 mRNA downstream 572231 95083 ~ 123672 (-) True LOC103021456
XM_022677679.1 mRNA downstream 606373 88370 ~ 89530 (-) True LOC111194215
XM_022677741.1 mRNA upstream 11075 718023 ~ 750580 (-) True pappa2
XM_022677748.1 mRNA upstream 284945 991893 ~ 1026466 (-) True tnn
XM_022677749.1 mRNA upstream 284945 991893 ~ 1026464 (-) False tnn
XM_022677750.1 mRNA upstream 284945 991893 ~ 1026461 (-) False tnn
XM_022677756.1 mRNA upstream 383289 1090237 ~ 1102807 (-) True trove2
TU186973 other upstream 343584 1050532 ~ 1101493 (-) True G138199
TU187245 other upstream 1771833 2478781 ~ 2486751 (-) False LOC103042176
XR_002651005.1 other upstream 2343452 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 3125773 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 3141052 3848000 ~ 3851682 (-) False LOC103047802

Expression Profile