RNA id: TU186970


Basic Information

Item Value
RNA id TU186970
length 409
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G138198
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1046296 ~ 1047398 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCTCTCTCTGGTGTGGTTTGGACACTCTGCTCTGTGGAATAACCTTCACTGCATACATCCGGCTGCTGGCGAGGTCTGTCATCTCATAGCAGCGAGCGAACCCTCCcttTCCCAGGAGCTTTCCTTTAGTGTAAGATCTCCCACTCTTCGGGTCCACCACCACCTGCGCCAGCTCCGGTTTCGGCTGTTCACATTTGTTCGCGGTGTTCCGGTTCGGCTTGGGCGGCGGTGCTGCCGGGGAGCGGTCCGGGGACGGGTTCAGTAATTCCGGGTTCATTATGTGGCAGGAGCGGCGCTGCGCTGTAGTAAAGCTGGTACAGTCCATTCATCCGGGTTAATCCGAGGCGTGGAAGCGGATTATTTCTGGGCTTTTATTCACAAAAATCCAGACCGAACAGATCCGCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186967 lncRNA downstream 1617 1041533 ~ 1044679 (-) True G138196
TU186966 lncRNA downstream 7214 1037867 ~ 1039082 (-) True G138195
TU186927 lncRNA downstream 181525 857948 ~ 864771 (-) True G138166
TU186921 lncRNA downstream 265763 775619 ~ 780533 (-) True G138160
TU186893 lncRNA downstream 539858 485697 ~ 506438 (-) True G138136
TU186986 lncRNA upstream 170076 1217474 ~ 1218913 (-) True G138209
TU187003 lncRNA upstream 202314 1249712 ~ 1250937 (-) True G138226
XR_002651003.1 lncRNA upstream 223413 1270811 ~ 1299166 (-) True LOC111194256
TU187017 lncRNA upstream 250956 1298354 ~ 1339115 (-) True G138231
TU187014 lncRNA upstream 251043 1298441 ~ 1336595 (-) False G138231
XM_022677748.1 mRNA downstream 19830 991893 ~ 1026466 (-) True tnn
XM_022677749.1 mRNA downstream 19832 991893 ~ 1026464 (-) False tnn
XM_022677750.1 mRNA downstream 19835 991893 ~ 1026461 (-) False tnn
XM_022677741.1 mRNA downstream 295716 718023 ~ 750580 (-) True pappa2
XM_022677681.1 mRNA downstream 328973 695950 ~ 717323 (-) True LOC111194217
XM_022677756.1 mRNA upstream 42839 1090237 ~ 1102807 (-) True trove2
NM_001291255.1 mRNA upstream 297666 1345064 ~ 1360413 (-) True shh
XM_022677761.1 mRNA upstream 408055 1455453 ~ 1487674 (-) True lmbr1
XM_022677762.1 mRNA upstream 444418 1491816 ~ 1497588 (-) True LOC111194257
XM_007229174.3 mRNA upstream 463235 1510633 ~ 1523685 (-) True dcaf8
TU186914 other downstream 339348 695903 ~ 706948 (-) False LOC111194217
TU186973 other upstream 3134 1050532 ~ 1101493 (-) True G138199
TU187245 other upstream 1431383 2478781 ~ 2486751 (-) False LOC103042176
XR_002651005.1 other upstream 2003002 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 2785323 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 2800602 3848000 ~ 3851682 (-) False LOC103047802

Expression Profile