RNA id: TU186973


Basic Information

Item Value
RNA id TU186973
length 2172
RNA type TUCP
GC content 0.50
exon number 10
gene id G138199
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1050532 ~ 1101493 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAATGAAACACAGttttttaaattagttttccTTCTGATACAGATATTATTAAAGAGTATAATACCATTGATCAGGCAAAAAAAGCTTATACCACGGGTTTGTCTGTAGTGACATGAAACCCAGGGGACTTTAAACCCATGAAAATAATCGATCAATCAATCATATTGAAGCACAacaatatcatgataatatccATATGCCTTTTTCTGATCCCTCCTTTTGTTATTCGAGCTTGAGGTTCAGAAGGGCCATTATTGCACAACCCAGACAAACGTCAACGAAGAAAGGCACTTTACGCTCCCCTCCACGCCTCACTGCGGGTCCTTCACTGCGCAGAATTCGCCACCCTCCTCCGCCAGCTTTAAAATAAACCTTTCTCCTGAAAATAAACTCTCGGAAGTCTAAAGCCGTCCATATCTGGCGTGTAGCTCTGTAAAATAAACCTCTACACGTCTGGAACTTTGagaaaaaggaggagaagaagaagaaagaaatggaAGGCTCGTGGTCGAAGCATAAAACGCCAGGCTCCTCTGCTCCTCTGCCTGGTTTCTGATTGGTTTCATCTTGAGTAGTAGAAGACGTTCAGTTCAGCACTCTTCACAATGTTCAAGCCCCTCCCACAATGTTGAAGCCCCTCCCACCAGTCCAGCTGAAAGAACGGGCCGAgtgctgtgttgtgtgtttgcaCGTCACGTCGGTAGTGTAAGTGTCAGGCGTCGGGTCAAGTATTAAAGGAAAAGTCCAGAACGTTGCACGGTgcgtcccatgacttctggttCCAGCCTTTGTTTAAGTccttttgatattttattttttgtattatttttttagcagcAAGTGTTGATGGCACGCAGCCCAAGCTTTTTTTATTGGGGGTTTGGGGGTTCGGTCACGCGCTGGCGTAGTGCTGCAGCAGCTGCACCACGTAATGCAGGCGGTGGCGCAGCTCCGACGAGCAGCCGCTCTCACTGAGCACGTGCAGAGGGTAGGAGGTGGACACGCGCTCCCGGCTGATGTACGTCAGCAGGTAGGAGGAGTCTGCAGACTTGCTCAGGATGACCTTCGTGTGGTCAGCGTAAAAGTTCACCTGTACTGAGCCGTTGTTGAAGAGCATGACCAGGGCATGTTCAGTTTTTATCCACTGCAGGAGAAGAGGTGGAGATGCAGAAGGAGGCGGCTGCTCCTCGAACCCCAGATCTCCTCCctcCATCAGATTCTGCTCCATGTATTTGGCCATGAGTTCCACGATGTGTTTCTGCCTCTGAAGAGGTTCAGGTAACGAATCAGCTTGAAAAGTGAAGtgtttgttgttggtcaggCAGTAATGCACCGTTCTGCGCTGATCACACAGGCTCAGGTGAGTCCCTTCGTTAAAGAGGACCCCGACGTTCTGATTGGACAGCTGATATCCGAAGCCGTACTTGTTGGAGTAATCCACCCACTTGCTCACCCACAGGAAAGGCTGAGGTTTCTCCAGACACGGAGGGTTTTtcgaagCTGTCGGCATGGTGGATAAGCAGCTGGTGAGAACCTTCTTGGCCGCTTCAGCCACAGCTGCTGGAGTCAAGGTGCCTTCACCTGCGTCAGTGCTGCTGGCCACTGTGCCTTTAAACGAGCGAGGAGCTGATTTTCTGGACTCTTCTTCACCCGGTGTGTCCAGAGGTCCAGAGCTGGCCAGCTGACCCACAGGAGAGGGAGCCTCATTCACCCCCACGGTCTTGTAGCTGATCTGCCGGCTGATGGAGTGCTTCACCATGCCGGACACAAGCTTCGAGATGTCCTCCTTATCTTCACTGGGCTTTTTCTCTACTTTGGACTTCTTTTTGCCGAATAAGCTCTTGGCCATTTTGGTGAAGAACTTCTTGGCAGGACTGGGTGGGCTGAGCTCTGGGACCATCACACAGGAGCTGGGGGGAAGTTTGTCTGGAGTAAAGCCCTTGCTGAAGTACTCGTGGACCAGAATCTGGTCGAGAGTGAGGCGGTCGCTGGGGTTTTTCTGCAGGACGGCGGAGATTAGCTTCTGTGCCGCTGGTGAAAGTGAAGGCGGGAGACTGTATCTCACTTCCTTTATGCATTTGTACGTTTCTTTCAAGTCTAAGGTTTCAAACGGAGGGTTTCCACACAGCAGCGTGTACCTGaacagcacagaaacacagagcaaAGGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186970 lncRNA downstream 3134 1046296 ~ 1047398 (-) True G138198
TU186967 lncRNA downstream 5853 1041533 ~ 1044679 (-) True G138196
TU186966 lncRNA downstream 11450 1037867 ~ 1039082 (-) True G138195
TU186927 lncRNA downstream 185761 857948 ~ 864771 (-) True G138166
TU186921 lncRNA downstream 269999 775619 ~ 780533 (-) True G138160
TU186986 lncRNA upstream 115981 1217474 ~ 1218913 (-) True G138209
TU187003 lncRNA upstream 148219 1249712 ~ 1250937 (-) True G138226
XR_002651003.1 lncRNA upstream 169318 1270811 ~ 1299166 (-) True LOC111194256
TU187017 lncRNA upstream 196861 1298354 ~ 1339115 (-) True G138231
TU187014 lncRNA upstream 196948 1298441 ~ 1336595 (-) False G138231
XM_022677748.1 mRNA downstream 24066 991893 ~ 1026466 (-) True tnn
XM_022677749.1 mRNA downstream 24068 991893 ~ 1026464 (-) False tnn
XM_022677750.1 mRNA downstream 24071 991893 ~ 1026461 (-) False tnn
XM_022677741.1 mRNA downstream 299952 718023 ~ 750580 (-) True pappa2
XM_022677681.1 mRNA downstream 333209 695950 ~ 717323 (-) True LOC111194217
NM_001291255.1 mRNA upstream 243571 1345064 ~ 1360413 (-) True shh
XM_022677761.1 mRNA upstream 353960 1455453 ~ 1487674 (-) True lmbr1
XM_022677762.1 mRNA upstream 390323 1491816 ~ 1497588 (-) True LOC111194257
XM_007229174.3 mRNA upstream 409140 1510633 ~ 1523685 (-) True dcaf8
XM_022677764.1 mRNA upstream 409140 1510633 ~ 1522531 (-) False dcaf8
TU186914 other downstream 343584 695903 ~ 706948 (-) False LOC111194217
TU187245 other upstream 1377288 2478781 ~ 2486751 (-) False LOC103042176
XR_002651005.1 other upstream 1948907 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 2731228 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 2746507 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 3230157 4331650 ~ 4335889 (-) False LOC103034146

Expression Profile