RNA id: TU187003


Basic Information

Item Value
RNA id TU187003
length 1188
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G138226
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1249712 ~ 1250937 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGAgactaaaaaatactaaaaaagactgaaaaagactaaaaaagtCTGAAGGCTGTTGTGGAAACGCCTCCGTCTCCTTGGTCCGACTTGCTGTCAGGTTCAGGGGAGGCGGGTTCATCAGAGAAGATGCTGTATTTTGTACTTTGATGGACACGAGATTCAGAAGGAGATTGACGAGGTCACTGTCCAAAATTTGCTGAAGATCACGGCCTGAGAAAGTGTTTTTTAGGCCCTTTGTGTGGACAGGTGTTCTGGAAAGTTAGCTGGAGTGtaagcatgtgtttgtgtgtgacagGGCGCGAGaggaaaagacagaaagagagagagagaaagagagagagacagaaaaaaagagagaggaaaagagggagGGTTGGCAACTGTGCTTCGCCAGAAAAGCGAGACACCTGCGACCATGACAGGAGGTTTTGACCTTCATctggagtctctctctctctcttttttcacactttttcactctttctcactctttctctctctcacacgttTTTTTAACTTCCAGTTCTATAGACGGGAGTCAGTCAGGCACCTCTGTGCTTGACCATTGGGTGTCATTTCCTCATACAAGGGCTCCTATAAAGGAAATGTAGATGAGGCATTGTTAGCGCATGGGAAACTCCGGTTGTCCCTCTTGATTCGTACACTCCCCTCAGCCCCGCTGTGGGAGGACAGGTGGTGTATTTCGGACCCGCGGTTTTCTCCAAACTTTAGGGAGAAGAATCAACACAATCACCCAGCAGACACAGCTCCTttagctgttgttgtttttatagaaaatgagaattttTAGCCAACTGTCCAAAGGATAGAACATCTCCTAGCCTACATCCAGTCAACTCAAGTGTCAAATTATAACCTTGTTTCTCCTGTTGTTATTCACCCATTTGAAAGTGGCAGCTGTCCTTTGCATTGAACTCCAACATTTCGTAATGAATGAACCCCAGAAATGGACCGggtttcttatttctttctcctgtaaGAAGAAGAGTTTCCATTTCCGAAAAATACAAGACTTCTTACTACAGAAACACAATGTTAAACCAAAAATAATTGCATATATCAATGCAAATAAttactgtataactgtataatgTAACATGAGAAAATGTGGTTGGAAAATAAAACTCACATTTACCAAATTCAGAAGCAAGCCCActtagtatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186986 lncRNA downstream 30799 1217474 ~ 1218913 (-) True G138209
TU186970 lncRNA downstream 202314 1046296 ~ 1047398 (-) True G138198
TU186967 lncRNA downstream 205033 1041533 ~ 1044679 (-) True G138196
TU186966 lncRNA downstream 210630 1037867 ~ 1039082 (-) True G138195
TU186927 lncRNA downstream 384941 857948 ~ 864771 (-) True G138166
XR_002651003.1 lncRNA upstream 19874 1270811 ~ 1299166 (-) True LOC111194256
TU187017 lncRNA upstream 47417 1298354 ~ 1339115 (-) True G138231
TU187014 lncRNA upstream 47504 1298441 ~ 1336595 (-) False G138231
TU187018 lncRNA upstream 85961 1336898 ~ 1368873 (-) False G138231
TU187045 lncRNA upstream 106823 1357760 ~ 1450758 (-) True G138254
XM_022677756.1 mRNA downstream 146905 1090237 ~ 1102807 (-) True trove2
XM_022677748.1 mRNA downstream 223246 991893 ~ 1026466 (-) True tnn
XM_022677749.1 mRNA downstream 223248 991893 ~ 1026464 (-) False tnn
XM_022677750.1 mRNA downstream 223251 991893 ~ 1026461 (-) False tnn
XM_022677741.1 mRNA downstream 499132 718023 ~ 750580 (-) True pappa2
NM_001291255.1 mRNA upstream 94127 1345064 ~ 1360413 (-) True shh
XM_022677761.1 mRNA upstream 204516 1455453 ~ 1487674 (-) True lmbr1
XM_022677762.1 mRNA upstream 240879 1491816 ~ 1497588 (-) True LOC111194257
XM_007229174.3 mRNA upstream 259696 1510633 ~ 1523685 (-) True dcaf8
XM_022677764.1 mRNA upstream 259696 1510633 ~ 1522531 (-) False dcaf8
TU186973 other downstream 148219 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 542764 695903 ~ 706948 (-) False LOC111194217
TU187245 other upstream 1227844 2478781 ~ 2486751 (-) False LOC103042176
XR_002651005.1 other upstream 1799463 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 2581784 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 2597063 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 3080713 4331650 ~ 4335889 (-) False LOC103034146

Expression Profile