RNA id: TU187121


Basic Information

Item Value
RNA id TU187121
length 418
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G138314
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1864087 ~ 1864524 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaacgaggcatttagGACATtgttaaaagtgcacaagaagcttattaaaaaacactgtttacatcctaaaCATAGTGTAGATAAATGTCTGAGCGCCGCCATCTTTAATTTAGGTCACCATAAGGTAAAAGATGTTGGTCGAGCACTAAAACGAATAAGTAGGATTTAAGttgaacagattgcaaaatgaattcTTTGGttgctgaaaaaaatatctggttactgttaatattagaaTGCAAAAAAccaacaacaaattacataaacattaATCAAAAAGTTTTATGGTCTATTCGTGCTCAATGGTTGatttattgtgacttaaattttTAAAGATGGCAGGCGCCCAAAGATTTACCTACGCTTTATGATGTAAACCGTGgtttttaatgagcttcttgtgcagttttaaagctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187123 lncRNA downstream 148 1828396 ~ 1863939 (-) False G138315
TU187146 lncRNA downstream 11119 1848857 ~ 1852968 (-) True G138329
TU187147 lncRNA downstream 11274 1848857 ~ 1852813 (-) False G138329
TU187149 lncRNA downstream 11274 1848857 ~ 1852813 (-) False G138329
TU187137 lncRNA downstream 17577 1845329 ~ 1846510 (-) True G138325
TU187154 lncRNA upstream 144 1864668 ~ 1865751 (-) True G138332
TU187182 lncRNA upstream 64599 1929123 ~ 1929509 (-) True G138342
TU187184 lncRNA upstream 94179 1958703 ~ 1959724 (-) True G138343
TU187206 lncRNA upstream 369018 2233542 ~ 2306295 (-) False G138358
TU187207 lncRNA upstream 369018 2233542 ~ 2306381 (-) True G138358
XM_007229166.3 mRNA downstream 33116 1823226 ~ 1830971 (-) True LOC103043415
XM_007229168.3 mRNA downstream 54436 1804837 ~ 1809651 (-) False fyttd1
XM_022677777.1 mRNA downstream 54439 1804837 ~ 1809648 (-) True fyttd1
XM_007229169.3 mRNA downstream 93870 1762109 ~ 1770217 (-) True LOC103044322
XM_022677779.1 mRNA upstream 59156 1923680 ~ 1965329 (-) True LOC103041568
XM_007229161.3 mRNA upstream 59156 1923680 ~ 1937540 (-) False LOC103041568
XM_022677686.1 mRNA upstream 104834 1969358 ~ 2070958 (-) True LOC103041268
XM_022677786.1 mRNA upstream 370053 2234577 ~ 2292404 (-) False LOC103039403
XM_022677784.1 mRNA upstream 370053 2234577 ~ 2292404 (-) False LOC103039403
TU186973 other downstream 762594 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 1157139 695903 ~ 706948 (-) False LOC111194217
TU187245 other upstream 614257 2478781 ~ 2486751 (-) False LOC103042176
XR_002651005.1 other upstream 1185876 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 1968197 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 1983476 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 2467126 4331650 ~ 4335889 (-) False LOC103034146

Expression Profile