RNA id: TU187245


Basic Information

Item Value
RNA id TU187245
length 2223
RNA type TUCP
GC content 0.45
exon number 6
gene id LOC103042176
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2477695 ~ 2486894 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGTTCTCCCGCTCGATTGCTAATGTCTGGCTGCGATTCCCATGCAGGACACGAAGCTCCCGCTTCCCATAGCTGACCGCTGACCAGCAAACACGCCACAAAATCCCGTTTTTACTAAAGgtGCTGTTCGCAGTACGATGCCGGCGGTGGTGGCGAGGCAGTGAGGCGATGGGCTGCACCTCGGCCAAGCCGCTATCAGCTGTACCTGGAGAAGAAGAGGGGCGGAGCAAAGCATACAGCAATGGAGATGCCTTCTCTGATGAGTACAAAATGAAAGGCGTTGAGAAGGTGAAGTATGCGCATGGAGAGGAGGAGCGAATGAACACACGCAACCAGGAAAACCTGGAGAAGAGCACACTTTTGCACAAAGGCAAACACAAAGATGTCAGTGGAAACACTAATAAGATAAGcATCCATTCCTCAGAGAGCCAGCAGGAGTTCTTCAGGATGCTGGATGAGAAAATTGAGAAGGGTCGGGACTACTGCTCTGAAGAGGAGGACGTCACATAGCGCGGCTCGTCTCAGCTCGGCCCAGAGGAGAAACCCGTCCTACCCCGGAGTTCCTCACGCCGCCCCTTTCCTCGTCTTCCTGGCCCTCAGAGCACCACGCGTTTTTAACACGATTCAACCCCGTACTCGCCCCTGTTTACATTGAGCACGGCTCGGCCGCTGGGGTTCACAGTTTGGCGTTTGAGTCTTTTGAAGATGTCTGGCAAGGAAAGGAGCGAACGCTCGGCGTGTCGGACGGACGAACCCGGGACACGGAGCGGATTTCCGATGGACTGTCCTTTATCGCCCCTGCCTTACAGCTGCCCCAGCCCATAAATAAGCCTTCTCCAGCTCACAGACTCGAACGGAATCGGAGAGAGAGCCATTGCACAGACTCGCCTGGAATCATTTCGGCCTGCTTTTTCTGTAAAGAGGACACAGGGACCGATGCTGCGTATCTTAGATCTTAGATGATCACGTCTTTTGAGAAtgataagaaagagagagaaatttgAGAGAGATTTAAGGGAGATTTGATGGAGATTTTAGTGAGATTGGTGACTAATGTGTGTCTAATAAAAGGTCACGTGACGTGCTAGCCCCATTCAGATGGTTTGACACTGAACCTCGAAGAGCGAATGGACAGAAAACCTACGGACTATTCCTAACATTCCAGGAGTCTTGTctctttatcttgtttttttatatgttggcaaagtattttttcttttgttcatttttgattTTGTTACACAAGTGCTACACCATTTCTTTATTACTTTTTCCAggtatttctcttttttattttgaagtgtAACACTGCTCAGGACTGTAGTGCTGTTATTTCTGACTGTTAGGGGTTGACGCTTTTGGTTAGCTTCTTCAGGATTGGAGGGGACACATGGACTCATGGACTCATGGACTGTAGACACAGTTGAACGACTGACAGATGGATAATAGTATTTAGGATAACTGTGTTTAGTGGGACCAGTTATAAAAGCATCATTATGATGTCATGTAGTTTCAAATACatatgtttgtgtttctgtagTGCACCAACAGTTTGGTATAATAAGACTGGATTACAGATGTAAGCTTCACCATCGAAGAGGGTGAAACGCAGGTTTTCTGGCAGAATTGTTGTCCAGCAGAAGAGAGAAAGGACTGTGAGGACACTAAGTACATAAAAGTACGAACAGattgagtaaaattaaactGCAGCCCTAAAGACCAAGCCTAGGTAGATAAGATACGGGCCAGGAGGGTTATTTTTCTAGTAGGCAAACGTTTGTTAGTGCAAAATGTTGAAAAGGTAGAATTGAGAGGTAATGAGGTCATGTATTTTGACTAGTTTTGAGATTTGAGAACCTGTAAAAgcaacattaattaatttattgggTTAATTTATGGGAAAATAGCTAGATTGTAGTACATGGGGAAATATgttaattcaatttttttgaaaaaaaaaaaaaaaagcactgatgATAAGAAGAAAGTAGTACAGTCAGTAGCACAACAACTTAGCAGCACACAGATGATTTATTATTAGGTTTTCATGCTGGATAGCTAACCGGCTGCCTCTTTGGATGAGCCAACAGTGCTAGCTGCTAGCTGCTTTAGATAGCTAACAATTAGCTAACAATAACCCATGGTGAGGCTTTTTGTTCAACCCATTTGTGGCTTGCTGGGTCTGCAGGGCTTGGAAAAACATCTAACAGTAATTTTTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651004.1 lncRNA downstream 83896 2392597 ~ 2394885 (-) False LOC103040233
XR_454875.3 lncRNA downstream 83896 2393836 ~ 2394885 (-) True LOC103040233
TU187231 lncRNA downstream 83918 2392661 ~ 2394863 (-) False LOC103040233
TU187232 lncRNA downstream 83918 2392661 ~ 2394863 (-) False LOC103040233
TU187230 lncRNA downstream 83918 2394083 ~ 2394863 (-) False LOC103040233
TU187280 lncRNA upstream 21081 2507832 ~ 2531897 (-) True G138400
TU187257 lncRNA upstream 35775 2522526 ~ 2529626 (-) True G138383
TU187259 lncRNA upstream 39985 2526736 ~ 2529626 (-) False G138383
TU187279 lncRNA upstream 67401 2554152 ~ 2570647 (-) True G138399
TU187289 lncRNA upstream 87569 2574320 ~ 2594954 (-) True G138408
XM_022677799.1 mRNA downstream 14492 2447385 ~ 2464289 (-) False LOC103043517
XM_022677797.1 mRNA downstream 14492 2447385 ~ 2464289 (-) False LOC103043517
XM_022677796.1 mRNA downstream 14493 2447385 ~ 2464288 (-) False LOC103043517
XM_022677795.1 mRNA downstream 14493 2447385 ~ 2464288 (-) True LOC103043517
XM_015606178.2 mRNA downstream 37314 2437569 ~ 2441467 (-) True LOC107197650
XM_007250627.3 mRNA upstream 1259 2488010 ~ 2491153 (-) True imp3
XM_007250629.3 mRNA upstream 28353 2515104 ~ 2520897 (-) True LOC103043115
XM_007250630.3 mRNA upstream 45507 2532258 ~ 2542943 (-) True LOC103043419
XM_007250632.3 mRNA upstream 77779 2564530 ~ 2567513 (-) True tctex1d1
XM_022677805.1 mRNA upstream 84655 2571406 ~ 2588323 (-) False LOC103043822
TU186973 other downstream 1377288 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 1771833 695903 ~ 706948 (-) False LOC111194217
XR_002651005.1 other upstream 563649 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 1345970 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 1361249 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 1844899 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 1846382 4333133 ~ 4338197 (-) False LOC103034146

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031929 True 769 mRNA 0.48 7 NC_007113.7 9959060 ~ 9971609 (-)
grasscarp (Ctenopharyngodon idella) TU28515 True 2679 TUCP 0.41 3 CI01000004 1864159 ~ 1873358 (+)