RNA id: XM_007250626.3


Basic Information

Item Value
RNA id XM_007250626.3
length 3452
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC103042176
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2477695 ~ 2486894 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCAGACTGGTTAAAACTGGTCAAAGCTTTCCATTTTATTTCGCGAATTAATGTGTTATTATCTATAATACTCCTAAAAGCCTAACTCTGCTTTTAAAGCCTAAGCAAAGCTTCGGGGGGTGAAATAACCCACCGCCCGGGTCTTTGTTCTCCCGCTCGATTGCTAATGTCTGGCTGCGATTCCCATGCAGGACACGAAGCTCCCGCTTCCCATAGCTGACCGCTGACCAGCAAACACGCCACAAAATCCCGTTTTTACTAAAGgtGCTGTTCGCAGTACGATGCCGGCGGTGGTGGCGAGGCAGTGAGGCGATGGGCTGCACCTCGGCCAAGCCGCTATCAGCTGTACCTGGAGAAGAAGAGGGGCGGAGCAAAGCATACAGCAATGGAGATGCCTTCTCTGATGAGTACAAAATGAAAGGCGTTGAGAAGGTGAAGTATGCGCATGGAGAGGAGGAGCGAATGAACACACGCAACCAGGAAAACCTGGAGAAGAGCACACTTTTGCACAAAGGCAAACACAAAGATGTCAGTGGAAACACTAATAAGATAAGcATCCATTCCTCAGAGAGCCAGCAGGAGTTCTTCAGGATGCTGGATGAGAAAATTGAGAAGGGTCGGGACTACTGCTCTGAAGAGGAGGACGTCACATAGCGCGGCTCGTCTCAGCTCGGCCCAGAGGAGAAACCCGTCCTACCCCGGAGTTCCTCACGCCGCCCCTTTCCTCGTCTTCCTGGCCCTCAGAGCACCACGCGTTTTTAACACGATTCAACCCCGTACTCGCCCCTGTTTACATTGAGCACGGCTCGGCCGCTGGGGTTCACAGTTTGGCGTTTGAGTCTTTTGAAGATGTCTGGCAAGGAAAGGAGCGAACGCTCGGCGTGTCGGACGGACGAACCCGGGACACGGAGCGGATTTCCGATGGACTGTCCTTTATCGCCCCTGCCTTACAGCTGCCCCAGCCCATAAATAAGCCTTCTCCAGCTCACAGACTCGAACGGAATCGGAGAGAGAGCCATTGCACAGACTCGCCTGGAATCATTTCGGCCTGCTTTTTCTGTAAAGAGGACACAGGGACCGATGCTGCGTATCTTAGATCTTAGATGATCACGTCTTTTGAGAAtgataagaaagagagagaaatttgAGAGAGATTTAAGGGAGATTTGATGGAGATTTTAGTGAGATTGGTGACTAATGTGTGTCTAATAAAAGGTCACGTGACGTGCTAGCCCCATTCAGATGGTTTGACACTGAACCTCGAAGAGCGAATGGACAGAAAACCTACGGACTATTCCTAACATTCCAGGAGTCTTGTctctttatcttgtttttttatatgttggcaaagtattttttcttttgttcatttttgattTTGTTACACAAGTGCTACACCATTTCTTTATTACTTTTTCCAggtatttctcttttttattttgaagtgtAACACTGCTCAGGACTGTAGTGCTGTTATTTCTGACTGTTAGGGGTTGACGCTTTTGGTTAGCTTCTTCAGGATTGGAGGGGACACATGGACTCATGGACTCATGGACTGTAGACACAGTTGAACGACTGACAGATGGATAATAGTATTTAGGATAACTGTGTTTAGTGGGACCAGTTATAAAAGCATCATTATGATGTCATGTAGTTTCAAATACatatgtttgtgtttctgtagTGCACCAACAGTTTGGTATAATAAGACTGGATTACAGATGTAAGCTTCACCATCGAAGAGGGTGAAACGCAGGTTTTCTGGCAGAATTGTTGTCCAGCAGAAGAGAGAAAGGACTGTGAGGACACTAAGTACATAAAAGTACGAACAGattgagtaaaattaaactGCAGCCCTAAAGACCAAGCCTAGGTAGATAAGATACGGGCCAGGAGGGTTATTTTTCTAGTAGGCAAACGTTTGTTAGTGCAAAATGTTGAAAAGGTAGAATTGAGAGGTAATGAGGTCATGTATTTTGACTAGTTTTGAGATTTGAGAACCTGTAAAAgcaacattaattaatttattgggTTAATTTATGGGAAAATAGCTAGATTGTAGTACATGGGGAAATATgttaattcaatttttttgaaaaaaaaaaaaaaaagcactgatgATAAGAAGAAAGTAGTACAGTCAGTAGCACAACAACTTAGCAGCACACAGATGATTTATTATTAGGTTTTCATGCTGGATAGCTAACCGGCTGCCTCTTTGGATGAGCCAACAGTGCTAGCTGCTAGCTGCTTTAGATAGCTAACAATTAGCTAACAATAACCCATGGTGAGGCTTTTTGTTCAACCCATTTGTGGCTTGCTGGGTCTGCAGGGCTTGGAAAAACATCTAACAGTAATTTTTTACCTCCTGATacctaaaaaaaagaacacagcccTCATACGGGGGacattagttttgtttttttttgtacatttaaaaatgattcttgacatttgggatcagaatgactcaattagtccaaaaacagaatgttagctttctacagtaagtgaataaattagttttaaacacaaaattaacttaaaaaaagaaaagaattctTTTTACCTGGTCTGGTATTTCtatctggactggctgtagaaacgtTTGACTGTGATTCACAACATCTTTCAACAATTTCCAATCAGATGACattaatgttgtcatgtgaccaataGATGATATAGGCAGTGTCTCAAAATGAGGCCAatgatatttaacattttacaaaaaataggATTATAGTGCAAAGTAGcggaaatataatataaatatcctTATATTCCCATATAAGgatgcagggtctcaagaggttaaaataaattagtaaaatatatatatatatattgacttTAAGGTCCTTCTGCTGAACACAATTTCTGTCAGTTAACTTGCAAACCAGtctttaatctgatttaataataataaaaaaactgacttttaggctaaaaagaaacacaccCACATGCCCCTATTCCGTGCAGCTATTTATTCACGTCTTTTAGTTTAGCCCAACCTAGAGCCTGGCTGATTTTTTAAAGCTGATAAATGAATGGGGCTTATTTGCTAGATGATGTTACGCCAAAATTactcaaaataacaaattaaatggGGAGTTTTTCAGACAAGGATtgagcctagtcttggactaaactaaagcattttgaatggagatgtTCCAGCATAAGGAAAATATAAACTGTGTTCAGAATTTACTCCCCATCGAAGAAGTAGTGCACTATTCCCTATATAGTTCACTACCAAACACCCATAATGCATCACAAAATGTAGTGTATAGATGATGTACACTAGAATTTCCAGTGTATAACATAATGCAGTGAAAGTGGTGTTATATTAGATGTTCTCAAAACTGCACAAACAAAGATTTTAAGAAAGTTTGTTGTTAGGTTGATCCAGTGTCAGTTCACTATATAGCAAATGtgatctacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651004.1 lncRNA downstream 82810 2392597 ~ 2394885 (-) False LOC103040233
XR_454875.3 lncRNA downstream 82810 2393836 ~ 2394885 (-) True LOC103040233
TU187231 lncRNA downstream 82832 2392661 ~ 2394863 (-) False LOC103040233
TU187232 lncRNA downstream 82832 2392661 ~ 2394863 (-) False LOC103040233
TU187230 lncRNA downstream 82832 2394083 ~ 2394863 (-) False LOC103040233
TU187280 lncRNA upstream 20938 2507832 ~ 2531897 (-) True G138400
TU187257 lncRNA upstream 35632 2522526 ~ 2529626 (-) True G138383
TU187259 lncRNA upstream 39842 2526736 ~ 2529626 (-) False G138383
TU187279 lncRNA upstream 67258 2554152 ~ 2570647 (-) True G138399
TU187289 lncRNA upstream 87426 2574320 ~ 2594954 (-) True G138408
XM_022677799.1 mRNA downstream 13406 2447385 ~ 2464289 (-) False LOC103043517
XM_022677797.1 mRNA downstream 13406 2447385 ~ 2464289 (-) False LOC103043517
XM_022677796.1 mRNA downstream 13407 2447385 ~ 2464288 (-) False LOC103043517
XM_022677795.1 mRNA downstream 13407 2447385 ~ 2464288 (-) True LOC103043517
XM_015606178.2 mRNA downstream 36228 2437569 ~ 2441467 (-) True LOC107197650
XM_007250627.3 mRNA upstream 1116 2488010 ~ 2491153 (-) True imp3
XM_007250629.3 mRNA upstream 28210 2515104 ~ 2520897 (-) True LOC103043115
XM_007250630.3 mRNA upstream 45364 2532258 ~ 2542943 (-) True LOC103043419
XM_007250632.3 mRNA upstream 77636 2564530 ~ 2567513 (-) True tctex1d1
XM_022677805.1 mRNA upstream 84512 2571406 ~ 2588323 (-) False LOC103043822
TU186973 other downstream 1376202 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 1770747 695903 ~ 706948 (-) False LOC111194217
XR_002651005.1 other upstream 563506 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 1345827 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 1361106 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 1844756 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 1846239 4333133 ~ 4338197 (-) False LOC103034146

Expression Profile