RNA id: TU187257


Basic Information

Item Value
RNA id TU187257
length 2102
lncRNA type inter_gene
GC content 0.46
exon number 6
gene id G138383
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2522526 ~ 2529626 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGTGGCTAGCTAAAAAaagctaactttcccattctACCTTAAATAGTACAACAAAAGGcacaggggctgcagcatttaaggcagaatgaacaataataattataataattcatttctgcacATCTACCCCCTTTATTATATGAAGACATACATTTATACAGCCCTAAAGTGAaatagttaaccagcagcagctaagctaactaaactttagcgctcctgatgacaTATCTATCGGGTGCTTAAGGTGGAGGATTTCCCCTCTTTACACTCGAAAAGAAAAGGTAAGGTAAGTATCAGGGCAAAATGGGTAAAATGGGATGAAGGTACAGCCTTAGAAGTCTAAGAGTAAACTTAAAGTAAATCTTAAAGAAGAAGCACAAAATTACtagatctcagaaagctgtgggaaagcggaggtgtgctattcattgAAGGGAAGtcctttttatcatgttttactacaacaaaagtcaattttacaccagagttcttctttaatAGTGTCTCTGCATTAAAAACATCATTTAGTCAAGACTTGAGCTTAACCTGGGTCTAGAAATCCAGCCTAAAATGCTGCAAAGTTAAGATCTAGGCCAGTGTTTCCTCAGCTCCAGTCAGATAATATGCATTTCACAGTTGTGCTTTAATCTTTATATTTGTAGGAATGAAGTCCTATTTGAACTGGATAAGGTGTTCTAGAcctggaaaaaaacacagaaccttACAGTAGAAATGAACTATATGACTGCAGCTGGAGAAACACTGGTTAATTCATACCGCTTACAGTTACTGTGATCTGGATGCAGCAGCTCTATGCAGTCAGTGCTTGGCCCCCTTTCATTGCTGTTCTGGCCTTAGTTAGACGTAGTTAAAGATAATATGGTTCCATCGTACAGACGAATCAAACTCTCAAACACACTTTAGGTCACATAAACACGGCGCAGAAGCTACCGCACACCATTCCAATGGAAACAGTCTCTTTACACTTTCACTCTACTGCTCTAATTTTTGTTCCTCTCCAGCGTTGTATTAAGCAGGTATGGCTGCAGGGCGACCAAACGTCTAGCCCCGCCCccgtccacacacacactcactcacacacacatacatacatacatacatatgcacacacccaacacatacacacacattcatacccACACACTCGCGACAacaatgacaaaaaacaaaaaacacatttaaatgaataaaaagataatcatgtaaataaatgaagcaTAGTGTTGCTGACATCAATAAAAAGAACATTCTGAAGATTTGGGGCTGATGGCACTTCAGCAGATGGAAGTTTTGGAGCTCTAGCCTTCCTTATCGAGGACTTTCTTCACGTCAGCAAACACCTCGTCCACATCACGCGAGGCATCAATGCAGCGCACTTTACCCTGCTGCTCGTACTGCTCTATGATTGGCCGAGTGGACTGCAGGTAGGTCTGGATCCTTTTCTCCAGACTCTCTCTGTTATCGTCTGTGCGGCCACTGCTCTTCCCTCTCTCCAGACACCTGTCGATACACACTTCATTACTGCAGtcaaaaaagagaacaaatttgACGTCGGCTTTGCCGTCCATGACTGTGGTCCAGCCCTGCAGGTTGTCTTGGTTTCGAGGAAATCCGTCAATAAGAAATCTGAACTTGTTCTCGTCCGCCTTCATCGTTTCCTCCATGGCCTTCCTCAGCAGGTTGATGGTGATCTCCACAGGAACGATCTTGCCCTCTTTGATGTAGCTGTCGATGAGCTGCCCGAACTCGGAGCCCGTGCGGCTGCGCTCCTCTCTCAGCAGATCTCCAGCAGACAGGTGAGTGTAGCTGTAATTCTGCACTATTCTGGCGCACTGTGTCCCTTTGCCCGCGCCCGGACCGCCCAGCACGAACACGACCTGCGGCTTCATGGCGAGCGCGATCCCACGCAGAGCGCTCGAGACTTTCTCACGCGAGCTGCGGATCAGACCGGCGATCATACACCGGCGCGGGGAGGGCGGGGGAGCGAGCGAGCGATATACCGACAATACCGGAGTCCGGAACCGCAACCTCCACCTCAATCACCGGGAGCTGCGTGGCGAGGAAGACGTGCCGCCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651004.1 lncRNA downstream 127641 2392597 ~ 2394885 (-) False LOC103040233
XR_454875.3 lncRNA downstream 127641 2393836 ~ 2394885 (-) True LOC103040233
TU187231 lncRNA downstream 127663 2392661 ~ 2394863 (-) False LOC103040233
TU187232 lncRNA downstream 127663 2392661 ~ 2394863 (-) False LOC103040233
TU187230 lncRNA downstream 127663 2394083 ~ 2394863 (-) False LOC103040233
TU187279 lncRNA upstream 24526 2554152 ~ 2570647 (-) True G138399
TU187289 lncRNA upstream 44694 2574320 ~ 2594954 (-) True G138408
TU187299 lncRNA upstream 89381 2619007 ~ 2656437 (-) True G138416
TU187297 lncRNA upstream 150418 2680044 ~ 2748727 (-) True G138414
TU187298 lncRNA upstream 179770 2709396 ~ 2745139 (-) True G138415
XM_007250629.3 mRNA downstream 1629 2515104 ~ 2520897 (-) True LOC103043115
XM_007250627.3 mRNA downstream 31373 2488010 ~ 2491153 (-) True imp3
XM_007250626.3 mRNA downstream 35632 2477695 ~ 2486894 (-) True LOC103042176
XM_022677797.1 mRNA downstream 58237 2447385 ~ 2464289 (-) False LOC103043517
XM_007250630.3 mRNA upstream 2632 2532258 ~ 2542943 (-) True LOC103043419
XM_007250632.3 mRNA upstream 34904 2564530 ~ 2567513 (-) True tctex1d1
XM_022677805.1 mRNA upstream 41780 2571406 ~ 2588323 (-) False LOC103043822
XM_022677804.1 mRNA upstream 41780 2571406 ~ 2588323 (-) False LOC103043822
XM_022677803.1 mRNA upstream 41780 2571406 ~ 2588323 (-) True LOC103043822
TU187245 other downstream 35775 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 1421033 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 1815578 695903 ~ 706948 (-) False LOC111194217
XR_002651005.1 other upstream 520774 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 1303095 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 1318374 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 1802024 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 1803507 4333133 ~ 4338197 (-) False LOC103034146

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_01814534_01821755.mRNA True 1389 mRNA 0.41 6 CI01000004 1813782 ~ 1821755 (-)
bowfin (Amia calva) AMCG00005377 True 1663 mRNA 0.58 6 CM030140.1 22224572 ~ 22229979 (+)