RNA id: XM_007250627.3


Basic Information

Item Value
RNA id XM_007250627.3
length 1085
RNA type mRNA
GC content 0.44
exon number 7
gene id imp3
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2488010 ~ 2491153 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCTGTTTCAGAGCCGCTGTGTTTCTCCAGCAGGCGGCCATGTGTTTCTCCTCACTCACTGTAGTGTTTCTCAGACTCCGCTAAGATtagctctctctgtttctctgtagttTAGCGGATTTAATCGGTAAAATGGTCCGAAAGCTGAAGTTCCACGAGCAGAAGCTCCTGAGGAAAGTAGACTTTATTAACTGGGAGGTGGATAATAACCTGCACGAGGTGAAGATCCTGAGAAAATACCACATCGAGAAGAGAGAGGACTACACCAAgtacaACAAACTGAGTCGCAACATCAGAGAACTGGCCCAGAAAATCCGCGACTTGGATGAAAAGGACGGTTTCCGAGCTCAGAGCACCTCACAGTTCCTGGAGAAACTCTACTGTATCGGATTGATCCCCACCAAACAGAACCTGGCTCTTGCAGATGCTGTCAGTGCTTCCTGCTTTTgtagGAGACGGCTGCCAACAATTATGCTGAAGCTGCGCATGGCTCAGAACCTGAAAGCTGCCGTCACGTTCATCGAACAAGGACATATTCGTGTTGGGCCAGAGGTTGTCACAGACCCTGCTTTTCTTGTTACAAGGAACATGGAGGATTTTGTGACCTGGGTGGACTCCTCCAAGATCAAACAGCATGTCATGAATTACAATGAGGAGCGTGATGACTTTGATCTTGTGGTTTGAGGCCGAGGTTGGACAGAGGTTGTTGAACATGAGAGCCAAAGGAAACCTCAGAAGCCACTCTGGATCCGCAGTCAGCAGAGCAATGTGAAGTCAAGGCCGATACACCATGGACTGAATGAAGACTTTATTACTGAAAGGATTTCGCTTAAACATTGCAACCCCTGTGATTGCAAAGAGAGGCTATTAGCACATTGGTGATgtgttataaaaatatttgtatatttattatacactgcGAGGGACATTTTAGTACATTAAGAAttgcaaaaacatatttttttgtaacaaaaattgtacagtgtgtgaagaaaaagctttcattttatgttggatttttttgttttcctttaatGTTCTTGTAGCCAGGTATGgctgctaaaataataaatctggAAAGAAAA

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651004.1 lncRNA downstream 93125 2392597 ~ 2394885 (-) False LOC103040233
XR_454875.3 lncRNA downstream 93125 2393836 ~ 2394885 (-) True LOC103040233
TU187231 lncRNA downstream 93147 2392661 ~ 2394863 (-) False LOC103040233
TU187232 lncRNA downstream 93147 2392661 ~ 2394863 (-) False LOC103040233
TU187230 lncRNA downstream 93147 2394083 ~ 2394863 (-) False LOC103040233
TU187280 lncRNA upstream 16679 2507832 ~ 2531897 (-) True G138400
TU187257 lncRNA upstream 31373 2522526 ~ 2529626 (-) True G138383
TU187259 lncRNA upstream 35583 2526736 ~ 2529626 (-) False G138383
TU187279 lncRNA upstream 62999 2554152 ~ 2570647 (-) True G138399
TU187289 lncRNA upstream 83167 2574320 ~ 2594954 (-) True G138408
XM_007250626.3 mRNA downstream 1116 2477695 ~ 2486894 (-) True LOC103042176
XM_022677799.1 mRNA downstream 23721 2447385 ~ 2464289 (-) False LOC103043517
XM_022677797.1 mRNA downstream 23721 2447385 ~ 2464289 (-) False LOC103043517
XM_022677796.1 mRNA downstream 23722 2447385 ~ 2464288 (-) False LOC103043517
XM_022677795.1 mRNA downstream 23722 2447385 ~ 2464288 (-) True LOC103043517
XM_007250629.3 mRNA upstream 23951 2515104 ~ 2520897 (-) True LOC103043115
XM_007250630.3 mRNA upstream 41105 2532258 ~ 2542943 (-) True LOC103043419
XM_007250632.3 mRNA upstream 73377 2564530 ~ 2567513 (-) True tctex1d1
XM_022677805.1 mRNA upstream 80253 2571406 ~ 2588323 (-) False LOC103043822
XM_022677804.1 mRNA upstream 80253 2571406 ~ 2588323 (-) False LOC103043822
TU187245 other downstream 1259 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 1386517 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 1781062 695903 ~ 706948 (-) False LOC111194217
XR_002651005.1 other upstream 559247 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 1341568 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 1356847 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 1840497 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 1841980 4333133 ~ 4338197 (-) False LOC103034146

Expression Profile