RNA id: XM_007250645.3


Basic Information

Item Value
RNA id XM_007250645.3
length 1656
RNA type mRNA
GC content 0.37
exon number 3
gene id LOC103047584
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2923160 ~ 2927621 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGTACGTGCTACTCCTCCTTCAACCTTTGATCAAGATGTTTCTATAGAAGCTTCATGTCTGCTTTTCCACTCTGAGAGAAACTCTGCAGCTGATTTTTACTGTATGATCTGAAAGCTGAATTCAGCTGAAGTCGTCTGAAGTCTGATTCTGGGCTGTGTTTACTGAAATGCAGGGTGAGAGCATGCTGGGAAGATTACAGAGGAAACTGCTGGTGGAGGATGGAGAAAATTCGAAAGACGATTTTAATGCCTCCAACCCCAGGATGATGGAGGAGAACGTGGCAGGCTCGAGTCCCTGGCCGATACTCGTCGGTCTGCTGCTCTCAGTGCTGTCTGTGGCCTTCGTCATCATGCTGGTAGTTAGATACCGCATCATCCAGCGCTTCTTTGGAGGCTACAGTGAAGCCCTCCTGCCTGAGGGGGACACAGCCAGTCAGTTCAGCCACGCCGGGACCCTCGCGGCCCACGGGATGAGGGAGAGGGAGGTGTACACCATCGATCACGAGGAAGACGACGACGGATTCATCGAGGACAATTACATCTCCTCTGGTGAGAAGCAGAAAGTCGCTACAGacacggaggaggaggaggttctAGACACAGACAGCGACGATGATCTGGACATTCATTTCTCTATTGAATGAACTGACGGCAGCACTGCAGCACTTAATACATCATTCAGATAATCTGGTTTATTTGTGTTCACACTGCTTCaggtgtaatttttttttttaaatattatttttcatacATAGTCACCAGTATCAGTCACATTAATAGTCAACCCCTTGTTTATTGAAAGTATAACTACATATAGGCACTAATTTaagatacattattattttttctctagTGGACACACATTCGTTacaaatttattataatttattacaaaaaaaaaaagggcactCTAAATGGTACTTTGTCATTTTTCCCATGCAATACGCAGCCAATTGAGTACTTTGTCTTGTTTTTGCCACTCTAAAGGGCACTTTAGCAAGGTTTTTTCAACCCTAGGGAACAAGGGGGGCTGTTTTAGGATAAGGGCCCACTCTTTTCTATTTAATTGTCTTCTTAGCTTATTCATAACAACTGTTTCAAATAGGAAATAATGACCAAAGTATCGTTCTAAAGAAAGCACTTGTTACTGAAgtttaactgaactgaacaaTCACGATTAATTTCCCCTGTAAGATAAACTGGTATACTTTGTATTTTTGGAAAGatctttactattattataattactgaaACATGTAATTACTGAAAAtacctatttaaaacaataaaaccatgAACAAATGATCCTTTTAATGAAGAAATAGGTCTAGATTGGATATTTGTATTGTGACGACTACCAGAGCacatttttcataatttaaCTTTTAGCCTTTAGTTCtattttattcaatattatttttatattatatttttaatattatatgtactaCAGTATTGTTGTAAGATTTGTACTATTACTATTTACCAAAACTAAATACTTCTTCTCAAccacattttacaatttttattcatatcttacaaaaaacaaattagaataattaaaaagaataaTTGTTGTAAAGAAAGTGCTTGTTACTGTAGATTCTCTGTAGAGTTTTGATGTATTTCAATAAAGAAATCACATTAGAAAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187334 lncRNA downstream 67342 2768999 ~ 2855818 (-) True G138446
TU187340 lncRNA downstream 73958 2847558 ~ 2849202 (-) True G138452
TU187341 lncRNA downstream 73958 2847558 ~ 2849202 (-) False G138452
TU187338 lncRNA downstream 134051 2788375 ~ 2789109 (-) True G138450
TU187333 lncRNA downstream 156045 2766207 ~ 2767115 (-) True G138445
TU187392 lncRNA upstream 94494 3022115 ~ 3023372 (-) True G138493
TU187409 lncRNA upstream 167980 3095601 ~ 3114602 (-) False LOC103025790
TU187408 lncRNA upstream 182676 3110297 ~ 3114602 (-) False LOC103025790
TU187430 lncRNA upstream 223300 3150921 ~ 3156055 (-) True G138515
TU187509 lncRNA upstream 229130 3156751 ~ 3160936 (-) False gipc2
XM_022677816.1 mRNA downstream 41297 2767191 ~ 2881863 (-) False LOC103046677
XM_022677815.1 mRNA downstream 41297 2767191 ~ 2881863 (-) True LOC103046677
XM_022677817.1 mRNA downstream 41297 2771630 ~ 2881863 (-) False LOC103046677
XM_022677812.1 mRNA downstream 181435 2734466 ~ 2741725 (-) True LOC103044426
XM_007250640.2 mRNA downstream 191444 2717466 ~ 2731716 (-) True LOC103046368
XM_007250646.2 mRNA upstream 4142 2931763 ~ 2936532 (-) True fam159a
XM_007250647.3 mRNA upstream 55365 2982986 ~ 2996307 (-) True scp2
XM_007250648.3 mRNA upstream 68933 2996554 ~ 3000039 (-) True c16h1orf123
XM_007250649.3 mRNA upstream 72500 3000121 ~ 3006666 (-) True LOC103022773
XM_007250651.3 mRNA upstream 97621 3025242 ~ 3029094 (-) True LOC103023383
TU187245 other downstream 436409 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 1821667 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 2216212 695903 ~ 706948 (-) False LOC111194217
XR_002651005.1 other upstream 122779 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 905100 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 920379 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 1404029 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 1405512 4333133 ~ 4338197 (-) False LOC103034146

Expression Profile