RNA id: XM_007250682.3


Basic Information

Item Value
RNA id XM_007250682.3
length 1880
RNA type mRNA
GC content 0.45
exon number 11
gene id eif4a2
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4068778 ~ 4074278 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTCCCGGTTAGATAAATTCGCCGGAGGATCACTCGCTCCTCCTTTCCGAGTGAATGCCTAAGTCGCGAACGGATCATGTCTAGCGGTTCTGCCGATTACAACAGcTCCAGAGATCGAGACCATGGGGGGCCAGAAGGAATGGAGCCTGATGGTATCATCgagAGCAACTGGAATGAGATTACAGACAATTTTGATGATATGAACCTGAAGGAGACTCTTCTCCGTGGGATTTATGCATATGGTTTCGAGAAGCCGTCAGCTATTCAGCAAAGAGCAATTATTCCTTGCATAAAAGgCTACGATGTCATTGCCCAAGCCCAGTCAGGAACTGGCAAAACGGCCACGTTTGCCATCTCCATCCTGCAGCAATTGGAGATTGAGCAGAAAGAGACTCAGGCTCTGGTCCTGGCACCAACCCGAGAGCTCGCTCAGCAGATTCAGAAGGTCATCTTGGCCCTGGGTGACTACATGGGCGCCTCATGTCACGCCTGCATTGGAGGAACCAATGTCCGCAATGAAATGCAGAAACTCCAAGCAGAAGCCCCGCACATTGTTGTGGGGACTCCAGGCCGTGTGTTTGACATGCTGAACAGGAGGTTCCTTTCTCCTAAGTGGATTAAGATGTTTGTCCTGGATGAAGCAGATGAAATGCTGAGTCGTGGATTTAAAGATCAGATTTATGAAATTTTCCAGAAATTAAGCACAAACATTCAGGTTGTGCTGCTTTCGGCCACTATGCCAGCAGAGGTGTTGGATGTGACCACAAAGTTCATGCGGGAACCTGTCCGCATCCTAGTGAAGAAAGAAGAGCTTACCCTGGAGGGTAtcaagcaattctacattaatgTGGAGCGAGAGGAATGGAAATTGGACACACTTTGTGACCTCTATGAGACCCTGACAATCACGCAGGCAGTCATTTTCTTAAACACTAGAAGAAAGGTGGACTGGCTGACTGAGAAGATGCATGCAAGAGACTTCACTGTGTCTGCATTGcatGGAGACATGGACCAGAAAGAGCGAGACATCATTATGAGGGAGTTTAGATCTGGCTCCAGCAGAGTGCTGATTACTACAGATTTGTTGgctCGTGGCATTGATGTGCAACAGGTTTCGCTGGTCATCAATTATGACCTTCCGACAAACCGTGAGAACTATATCCATAGGATTGGCCGTGGTGGACGCTTTGGCAGAAAAGGCGTTGCCATCAACTTCGTTACTGAGGAGGACAAGAGGATTCTTCGAGATATTGAGACCTTTTACAACACGACCGTTGAGGAGATGCCCATGAATGTCGCTGACCTGATTTAAACTCTGGAGATTTTAATGCAGGGATAGCTATTGAATAATCACTTGCATTTGCGCTTATTTTATTGGAAGAATAAGTCGGTCCTCCTCAATGCTGGCTGTGGATCAGACTTGCGAATTCGATTTGATACGTGACGTGACTTTTCTGCGTGGACGGTCGTAGACTCCTTATCGGTCTCCGCTGGTAGTGGAGTTTACAGAACATGGATTCTTTAAATGTATTCTTTATCAGGTATTTTCTCCCTAGTATGTTTAAGATGTACGTGTTAGATGTTCTTCACCGTTTAGTAACCTACTTATGGACTAAAAGATACAAGTGCTGCATCAAGTCTGCCAATTATGTTATGCTAACATATGTGTGCAGTTTAACTTGGTTCACGCTTCCCTTGTCAGTAAAATGAAaggcacttttttttgttgaatgtattaaattaattgtatattgttttaagtactttttctgtgtgtgtgaagtcCTCTTCAAAAGTGGGTCTTTAAACTAAATGTTCCATGTAGTGTTTGGCTCATTTGACAATAAAGAGGATAGTGCTACTCGTCCTTTAACATCTGA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03257 EIF4A; translation initiation factor 4A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187864 lncRNA downstream 17547 4050167 ~ 4051231 (-) True G138815
TU187834 lncRNA downstream 126304 3940636 ~ 3942474 (-) True G138794
TU187739 lncRNA downstream 226998 3841399 ~ 3841780 (-) True G138716
TU187728 lncRNA downstream 237486 3830667 ~ 3831292 (-) True G138706
TU187655 lncRNA downstream 404770 3663776 ~ 3664008 (-) True G138662
TU187866 lncRNA upstream 1222 4075500 ~ 4077466 (-) True G138817
TU187898 lncRNA upstream 67190 4141468 ~ 4151135 (-) True G138830
TU187902 lncRNA upstream 87934 4162212 ~ 4162480 (-) True G138834
TU187888 lncRNA upstream 98701 4172979 ~ 4175596 (-) True G138822
TU187924 lncRNA upstream 105546 4179824 ~ 4234182 (-) True G138837
XM_015606174.2 mRNA downstream 52639 4002825 ~ 4016139 (-) True LOC103021848
XM_022677695.1 mRNA downstream 78515 3974810 ~ 3990263 (-) True LOC103032259
XM_022677842.1 mRNA downstream 207422 3847722 ~ 3861356 (-) True LOC103047802
XM_007250677.3 mRNA downstream 271984 3793328 ~ 3796794 (-) True LOC103031615
XM_022677841.1 mRNA downstream 308796 3722737 ~ 3759982 (-) True LOC103031087
XM_022677850.1 mRNA upstream 31276 4105554 ~ 4121993 (-) False LOC111194272
XM_022677848.1 mRNA upstream 31276 4105554 ~ 4121993 (-) False LOC111194272
XM_022677847.1 mRNA upstream 31276 4105554 ~ 4121993 (-) False LOC111194272
XM_022677849.1 mRNA upstream 31276 4105554 ~ 4121993 (-) True LOC111194272
XM_022677851.1 mRNA upstream 54254 4128532 ~ 4142618 (-) True ripk2
TU187750 other downstream 217096 3848000 ~ 3851682 (-) False LOC103047802
TU187730 other downstream 235108 3832721 ~ 3833670 (-) True G138708
XR_002651005.1 other downstream 1006019 3050400 ~ 3062759 (-) True LOC103045355
TU187245 other downstream 1582027 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 2967285 1050532 ~ 1101493 (-) True G138199
TU188022 other upstream 257372 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 258855 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other upstream 261713 4335991 ~ 4338094 (-) False LOC103034146
TU188266 other upstream 1201828 5276106 ~ 5276468 (-) True G139074
TU188315 other upstream 1255800 5330078 ~ 5330805 (-) True G139105

Expression Profile