RNA id: XM_022677691.1


Basic Information

Item Value
RNA id XM_022677691.1
length 1983
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC103045647
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3071150 ~ 3082049 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttctacgttcacattaccagactAAGGTTGGCAGCTACAAAGGGCAAAAAGATAAGTCGGAGGGATTTCCTTAAAGTTAATGTGCAGCACACATGcactgggATCATGAACTACGTTCTGGTGCGAGTCCCTCCTCCCTCTGTGGGTCTCCCTCGCCCTCgtttctccctctatctctcctcCCAGCTGCAGTACGGCGTGGTCATCGTCTACCATCGACAGTGTCAGCTCCTCttagAGGATATCCAGGAGGCCATAGACAGACTGCTGCGGTTCCGCGCACAGGTCCAGATCGACATGCCGCAGGAGGACATCAGGCAACCTCACACCATTCCTGACGCTCTGACTCTCCTGAATGAGACGGAGGGAGCGAGGGATCCGTTCTTTGGGTCGATGGAGCTCAGCCTTCCCAGTCCCAGCAGCCTCATTGAGCTGGCTCAAGACATAGAAAAGATGTCTCCTCAGCGCCAGTCGCCGGAAAGAGCAGTGACCCCACCACCCGACGGAATCACAGCCAGTCAGGAGTCCATCACTCTGATGGAAAGAGAACCTGAACCCATACCTGAACCTGAGTttgagggggcggagcttcaGGATTTTAATATGATTGAGATGCTGATGGAGCAAcctgatgatttttttatggACGAGgaggagagacagcgagagagagagagagaaagagaaagacagaggcaagagcgagagagtgaaagagaggaggatatacagagagagcgagagagagcagcagcagagacagagagactgagagagataaCTAAATCCACCATCTCTCTGGAGCAAATTCAAACCCCTGAGGTTCCCAGCAGAGACATTGTGCTCGAGGCTGAGGAGGCGATGGGTTTGCCGATGGAGATGCCTGAACCGGTAGAAAGAGAATTAACACCCATCTCTGAATCTTTACTAATTCCACCATCTCCACCCAGCCCagtagagaggagagaggagccCAGAGAGAGTCCCAGACtggagCCTGTTCCGATCAGCCCTCAGCCTCTGGTGGaacagaggaggagaaggaggaggaggcaaCGGCTCGTCATTGATGAACTCACGCAAATTCCCCTAGAAACCATGCAGGCCCAGATCAACGACCTGAACATGGAGACCAAGTCACTGGCGGATATTCTTGTCAAATCTCCTTCCCAACAGAGTGACCCTAAAACACTCCTCAGTAACCCCTGCACGAGTTTTCCTCCTGAAATCCTGGAACTGTGGAAACAGTGCGCAGTCATCCGCCCCATCCCTCCGTTACCACAGCGTGAAGAGgtcagagaggaggaggaacaaAGAGAGGAACCAGAGGAGAAAGAGGCTGAGCCAGAGATCGCCTCCAAGGAGGTGCCCAGAGAGATGGGAGAGTCAGGCATCTCTCAGTACGAAACTCAAGTGTCGTCGCTGGTGATGCTGGagaccacagagagagaaatgtcGCCAATGGAGACTCCTGAGACTCAACGGTCACCTATTCCCATCTCCTTGCATGGATTGGAGGACATTGCTGAAGAGAGGGTCCCAGAACTGGAGGAAATCCCAATGGAAACTGAGAGTCAACTAGGGGAGGCGCCGACTTTTCACTCTCTGCTGCCGCCTGCGGTCAACCGCAGAACTGTCGCCCAGACCTTCTGGAGGCTTCTCGAGAGAATGaacacaaaggaagtgacagtGCAGCAGGACGAGCCGTACGGTGACATCTTcatcacacagacagagaggccGAAGGAgtgattttagtgttttagagtAATTCTCAAAAATTAcagttattacaatattattgccATAAATTTAGGGACAGTTCAAATGTTCAATAGGAACTGTGCATTCACTATTAAGTACAGCTGTTTGTTTAAGCAATGTGTgttattttaactgttataagGCTCTGTTTCTTTAATCTACTGTATCAGTTTTAAATGTGATgtatttaaattcaattttaaagtttaattgtATGAA

Function

GO: NA

KEGG:

id description
ko04320 Dorso-ventral axis formation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187392 lncRNA downstream 47778 3022115 ~ 3023372 (-) True G138493
TU187334 lncRNA downstream 215332 2768999 ~ 2855818 (-) True G138446
TU187409 lncRNA upstream 13552 3095601 ~ 3114602 (-) False LOC103025790
TU187408 lncRNA upstream 28248 3110297 ~ 3114602 (-) False LOC103025790
TU187430 lncRNA upstream 68872 3150921 ~ 3156055 (-) True G138515
TU187509 lncRNA upstream 74702 3156751 ~ 3160936 (-) False gipc2
TU187521 lncRNA upstream 112544 3194593 ~ 3198484 (-) True G138563
XM_022677821.1 mRNA downstream 8392 3050400 ~ 3062758 (-) False LOC103045355
XM_022677822.1 mRNA downstream 8392 3051322 ~ 3062758 (-) False LOC103045355
XM_007250652.2 mRNA downstream 37082 3029732 ~ 3034068 (-) True LOC103023705
XM_007250651.3 mRNA downstream 42056 3025242 ~ 3029094 (-) True LOC103023383
XM_007250649.3 mRNA downstream 64484 3000121 ~ 3006666 (-) True LOC103022773
XM_022677823.1 mRNA upstream 2693 3084742 ~ 3086475 (-) True LOC111194268
XM_007250657.3 mRNA upstream 7342 3089391 ~ 3099890 (-) True LOC103025183
XM_007250659.3 mRNA upstream 28353 3110402 ~ 3114686 (-) True LOC103025790
XM_022677826.1 mRNA upstream 37930 3119979 ~ 3150877 (-) False LOC107197653
XM_022677830.1 mRNA upstream 37930 3119979 ~ 3126261 (-) False LOC107197653
XR_002651005.1 other downstream 8391 3050400 ~ 3062759 (-) True LOC103045355
TU187245 other downstream 584399 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 1969657 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 2364202 695903 ~ 706948 (-) False LOC111194217
TU187730 other upstream 750672 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 765951 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 1249601 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 1251084 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other upstream 1253942 4335991 ~ 4338094 (-) False LOC103034146

Expression Profile