RNA id: XM_022677756.1


Basic Information

Item Value
RNA id XM_022677756.1
length 4201
RNA type mRNA
GC content 0.42
exon number 9
gene id trove2
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1090237 ~ 1102807 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTGGAGCGCGCCCTTGGATTTAGCTAGCTTTTCTCCTTCCTAAGTAGGGAACACTTGGATATTTGGGAAATTTCGGAAAGCCAGAGCTTTGGCACACAGCTCGGAAGCATCACTATGGAGCTGTCCTCTCCCCCGGAGCAGTTGCTGAACGATCAGGAGGAGCAGGGCCATTTCAGTTCAGGCGGCGCTGATCATCCGTGGGCGGTCACAGAGTCTCTGCGTCTGCGGCGTTTCCTCTGCTACGGCTCGGAGAGCGCCACCTACAGCACGAGGGAGCGAGCGCTGGGACCGGAGGGCGCCCTGGCCCTCATGGAGCTGGTGCAGGGGGGCCGCAGCTGCgaggtggtggaggaggtgaAGAGAATGTGTCTGGAGGGTAAAACGGTCCGGCCGAACCCGGCACTGTTCGCTCTGGCCGTGTGCTCGCAGAACTCGGACGCTAAGGCCAAGCAGGCGGCGTTCCGCGCCCTGCAGGAGCTCTGCAGCTCCCCCGGGCAGCTCTTCACCTTCATACAGTACAAGAAGGAGCTTAAGGATGGCCTGTGCTGTGGCATGTGGGGGCGTGGCCTACGCAGGGCTGTTAATGATTGGTACAACAGCCAGGATGCCCTCAGCCTCGCGCACACCGTCACCAGGTGTAAACACCGGGCCGGGTGGTCCCATCAGGACCTTCTCAGACTGTCTCACCTTAAACCAGCCAACGATGCTATTGCACTTATAAGCAAATACGTGACGAAAGGCTGGAAGGTGGTGCAGGAGGCGTATGCAGATAAGGAGAAGTCTGAGGAGCTGATGAAGGTGTTTCTGTATCTGGAGGCGGTGGAGAAGGCCAAGCACTCGACGGATGAACAGGAAGTCGTGCATCTGATAGAGGAGTACAGGCTGGAGCGCGAGCAGATTCTGACCACTCATCTCAAGTCCAAAGAGGTATGGAAAGCTTTGCTGAAGGAGATGTCCATGTCTGCTCTGATGAGGCACCTGGGTAAAATGACTGCAGATAAAGTTCTGATGCCTGGAAgtcctgaagttgctgctgttTGTGAGAGAATCCAGGACGAACAAGCCCTGACAAAGGCTAAAACGCACCCCTTCAGCGTCCTGGTTGCATCTGAAAACTACAAGCGTGGCCACGGGAAGCGGGGAAAGTTAAAATGGCAGCCGAACAGAGACATCATTCAAGCGCTGGACTGCGCCTTCGCTAAGTGTCTCTCAAACGTGGAGCCCACGGGGAAGCGCTTCATGGTGGGAGTGGATGTGAGCGCCTGTCTCCATAGCCTGGCTCTGGGAAGCTCCGTCCCCAGCGTGGCCGTAGCTGCAGCCATGAGCATGGTGATTGCACGAACTGAACCGGAATCTGAGGTGTTGATCTTCTCTGAGGAGGCTCTGGTTCCCTGTGTGATCTCAGACGACACGTCTCTAATCCAAGTAACAGCACAGCTGGTCCAGATACAGAGTGTTGGTACGGACTGCACTCTGCCCATACAGTGGGCTTCAGAGAACGACAAGACCGTGGACGTGTTCATCATATTCACCAACAACGAGACCTACGCAACCATTAACCCCACAGAGGCTCTGAGGACGTATCGAGAAAAAACCGGCGTGTTTTCCAAGCTGATTGTTTGCGGAATGACGAGCAACGGCCTCTCTGTGGCTGATCCTGATGACCGGGGCATGCTGGATATCTGTGGTTTTGACTCGCGGGCGGTCGACGTCATTCACAACTTTGTGTTGGACGCTATTTGAAAGtggtgcattgtgggaaatgtaggcTAGCTTTTTCTACGGACCGAACTGAGCACGGACCTGCCCTGGTGATGTCATTACTGATGGGATAGATATGAAGATAcagcttcataaaaaaaattgaattacaataaaaatgacaaaagagAAACAATGAGAAACAGGGAATTTGATGAAGTCCAGCAGGCTGGATTGGTATTTaggtaaaattatgaaaaaaaataaaataaaataagtttattcGCCCTAAATTCAGCAGCTAATTCGGAGTTATTAGctgttatattacattaaagtGGAAAAATAAGAGGAATTTTTGAAAATTAAGGAACGCTAAATGCTTGGTTCATTATGCTTTTAATGAGGACATCTTTTAGTCAACTTatttcactgattaaatatatttaaagatatATGCTATATGCTAATAGAGGCCTTTCTTTATCACGTCTGATGTCTGTATTCGCTCCCTGCCTGCTGTCAGTTACGAATTTTAACGTAAAATCATTGAATGTTGTCGTTTCTTCCCTTTTTGTACTAATTTGTGGATCTATGATCTACGTTGAATATCCCTCAAATTACATAATGAAGTCTGGTGTCCTAAAAAAAGCccattttaaaggagaacttcagtgtaatatgtatttttgttgtagtaaaacatgataaagtgtacaaattttgttgaatagcacacctctgctctcctgcagctttccgagatccagtcaTTTTATTCAGTTTGTCCAAACGCCCTTtagaatgggttttaatggggcatattCCTGCCCCTGCAGAtcaattttgcatttttttacacGCATTATtcaggcttaaagtagctccactgTTCATTTTTAGAATCTTAAAGCTTTAAACTATTGACTCAGGAAGTTCTGATGTCCTGGAAACTCGACCCTAACAAGAAAATAGAACGTCTActttatattgatatatatttatagcattTCTCTGTAATAATACACAATAGACACAAAGGTAAATGAGGAATTTCATCGATTTGATAATATGTTCTCGGTTTGTTTCACTCTACAGGTAAAGGTTGATACAAAGAACCTTCATATACAAGCAGAAAtcttttaaaaagaagaaaaaaaacaataaaagcaaaaaaaaaaacaggattaaaagAATCTCTGTTCTGATTGTTAAActcattctgtgttttttgtatgattttatgatttgttCCTGAATCTGAATCCTGcgttcaaaaatatatatatatatgtaaaaaaaaacattaaaataatcatgtttatttaaagtctCACATACATTTAAAAGGAGGCattgcacaagaagtttattaaaagtgtAATCTACTTCGTACGGGGATGTAGCGTACAGTTCTGCAGTTTTTAAGGTATTAATggctcgttttaaatgtcagagctctccgtgttctaccaataaagtgtgaAGCTTCTCTGAGCCTgattaacagtgtaaaaaatgcaatttatctgcaggggcaaaaatatgccccattaaaactCAGTCTTAAGGGTGTTTTGATAAAcagaataatacaataaaattgctggatctcggaaagctgcaggaAAGCGGAGGGGAGCTATACAACAAGGTCAAGGTtaatactctttatcatgtttaactacaacaaaattaaattttcaattttacaccggagttctcctttaatcacTTTGTGTAATACTTTGTTTTACAAACAAATTACCTCAGTTGTTTGGATACTGTATGGATGAATAACTTGCTattggattattttattttattttttagttttaatttttaatcaggactgaattttgagtttttaattcagttaaatCCGAGGTATAGattctatttaaaacaaaaaaaaaaaacaagaagaaaatgTTGAAGATTTGAAGAAGAGATTTTTGACACTATATTGGTGCACTTTTGACGTGTTTATTGAAGAATTAGAAACGTACagaatactgtactgtatactgtatacagacGCTATGGCACTGTGAGAAGGATCAATAGCTATTGGTGTGAGATGATGTAGCGCGGTGTAGCTAGAGTTCACTATTAGCTttgtttacaattattttattctgtttttattaattaactattgtttttggttgttttttcgTTTGTAATGCtcgctgctgttttttttcctgcattagAAATAGTTTAAACCCAAAGTCTGACAGTGCTAATACCGAGTGAAGAGAATTAGccactaattattattatttttatgatgcACATTACTTTTTGCTAACTAATGGCTGCtagctttttgtttttctatttttcttcattAGTTAGATTAGCATTTCACTTTTTAGCTCTTTCTTTTAAAGGGAAATTCCACCAATAGTACTAAATAGTGCTAAATATTTcatatactgtaactgtagtGAAACGTACCAACCCTGATTAAATCTGCTTTAAAGTGGTGGTGAA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K11089 TROVE2, SSA2; 60 kDa SS-A/Ro ribonucleoprotein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186970 lncRNA downstream 42839 1046296 ~ 1047398 (-) True G138198
TU186967 lncRNA downstream 45558 1041533 ~ 1044679 (-) True G138196
TU186966 lncRNA downstream 51155 1037867 ~ 1039082 (-) True G138195
TU186927 lncRNA downstream 225466 857948 ~ 864771 (-) True G138166
TU186921 lncRNA downstream 309704 775619 ~ 780533 (-) True G138160
TU186986 lncRNA upstream 114667 1217474 ~ 1218913 (-) True G138209
TU187003 lncRNA upstream 146905 1249712 ~ 1250937 (-) True G138226
XR_002651003.1 lncRNA upstream 168004 1270811 ~ 1299166 (-) True LOC111194256
TU187017 lncRNA upstream 195547 1298354 ~ 1339115 (-) True G138231
TU187014 lncRNA upstream 195634 1298441 ~ 1336595 (-) False G138231
XM_022677748.1 mRNA downstream 63771 991893 ~ 1026466 (-) True tnn
XM_022677749.1 mRNA downstream 63773 991893 ~ 1026464 (-) False tnn
XM_022677750.1 mRNA downstream 63776 991893 ~ 1026461 (-) False tnn
XM_022677741.1 mRNA downstream 339657 718023 ~ 750580 (-) True pappa2
XM_022677681.1 mRNA downstream 372914 695950 ~ 717323 (-) True LOC111194217
NM_001291255.1 mRNA upstream 242257 1345064 ~ 1360413 (-) True shh
XM_022677761.1 mRNA upstream 352646 1455453 ~ 1487674 (-) True lmbr1
XM_022677762.1 mRNA upstream 389009 1491816 ~ 1497588 (-) True LOC111194257
XM_007229174.3 mRNA upstream 407826 1510633 ~ 1523685 (-) True dcaf8
XM_022677764.1 mRNA upstream 407826 1510633 ~ 1522531 (-) False dcaf8
TU186914 other downstream 383289 695903 ~ 706948 (-) False LOC111194217
TU187245 other upstream 1375974 2478781 ~ 2486751 (-) False LOC103042176
XR_002651005.1 other upstream 1947593 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 2729914 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 2745193 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 3228843 4331650 ~ 4335889 (-) False LOC103034146

Expression Profile