RNA id: XM_022677796.1


Basic Information

Item Value
RNA id XM_022677796.1
length 2190
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC103043517
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2447385 ~ 2464289 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTAAATgaaagcaggaggaggaggaggagagagaggagcggACACGGAGGGATGTAAAGATGGCAGAGCTGCAAATGTTACTGGAGGAGGAAATCCCGGCTGGGAAGAGAGCCCTGCTGGAGAGCTACCAGAACCTGTCGAGGGTTGCGGAATACTGCGAGAACAATTATGTGCAGGCCCAGGATAAGAAGAAAGCCCTGGAGGAAACCAAAGCCTACACCACCCAGTCTCTGGCCAGCGTGGCCTACCAGATCAATGCCTTAGCCAACAACGTGCTGCAGCTGCTGGACATTCAGGCTTCCCAGCTGCGCCGGATGGAGTCCTCCATCAACCACATCTCCCAGACTGTGGACATCCACAAGGAGAAAGTCGCAAGACGAGAGATTGGGATTCTCACCACCAACAAGAACACGTCCCGAACCCACAAGATCATCGCCCCCGGAAATATGGAGCGGCCAGTTCGCTACATCAGAAAGCCCATCGACTACACCCTGCTGGACGACGTGGGCCACGGTGTTAAAcaAGGGAACAGCCAACCTGCCAGAGCTAGTGGAGGAACTTTATCAAGGACCAATCCACCAACACAGAAACCACCAAGCCCACCCATGGCAGGGCGGGGCACACTGGGACGAAACACACCCTACAAGACTCTGGAACCCGTCAAGCCTCCAGTGGTGCCAAACGACTACATGACCAGTCCAGCTCGGCTGGGCGGTCAGAACAGCCCGGGGCGCACAGCCTCCCTCAACCAGAGACCCAGAACACACAGTGGAAGCAGTGGGGGCAGCGGTGGTCGAGAGAACAGCGGGAACAGCATGGGCATCCCTCTGGCCGTTCCAACACCCTCCCCTCCCAGTATGGCACCAGtggttCCTCCAGGTCCAGGTCTAGGCCCAGTTCCGATGTCCCAGTTCGGCACCATCTCTCGGCAGATCTCCAGGCACAactcctccaccacctcctcctctgCCTCCATGGTGTCGGCCACGGGCACATACCGCCGAGCCCCCTCCAGCTCCTCCCAGTTCTCTGTGCCCCAGCCGCACCTCAACGGGGGTCCCACATTCCCccagaacacagCGCCTGTGCCCCAGCCGCCTCCTCCCATGGTGCAGCTAACACCCCAGATTCCTCTAACTGGCTTTGTGGCCAGAGTTCAGGAGAACATATCAGACAGCCCCTCCCCTCCGCCGCCACCGCTGCCTGAGGACACGCCCCTGTTTGAGGATCCAGCTccgccccctccccctcctcctgtGGACTACGAGGAAGAGGACGGTGCTATGGTCCATTATAATGACCCTTACGCTGACGGGGACCCTCACTGGGCCCCCAAGTCCTACATAGAGAAGGtgGTGGCAATCTACGACTACACCAAGGACAAGGACGACGAGCTTTCGTTCATGGAGGGCGCCATCATCTACATCATTAAGAAGAACGACGATGGCTGGTTCGAAGGCGTGTGCAACGGCGTGACCGGTCTATTCCCCGGCAATTACGTGGAATCCATCATGCACTACGCCGACTAGCGCTGACCGCTAACCATCGCAAACAAACATTTCAAGTGCATTAGGATATGACCGaatgtttgtttactttgtctAAGCACCGACGTATTTAAGTATTTGCTATGCGCAACAAGTCGAGGAACTGATTGAACACAAAGGCGAATGCGGAAAGAGCAGCAGCGGAACGTCTTCGCTTCTTTCTAGCTAGGtctttttttgttctatatTTTGTACATACGGTACTGTACGAAGCTGCCTGTAGATCGTtaactagtgtgtgtgtgtgtgtgtgttttcatgtgTGTTTCGTCAGTGTAGCGAGGCCAGTCTTTGCAGTATGCCAACTTGTCGGCTAGGGCTTGTTTTTATTCGGAACCGCTCGTTGTAATTTTTTCCGTAATTTACTGCCAAACTCTTCCCTTGTGTCGGGGAAGACGTGTTTTGAATGTTGTTTCTAAAACGTGAATCACGCCTGGCTGAAGATtaggcgaaaaaaaaaaactggaaaaacgatcattgtgatttttgtttttttccattttgcctTCAGTGATTGCCTACACTGTAATTGACATGTTCCACCTTCGTTGCTCTGGCTCGACCAGGGCGGAGGAAGGGTGCAGTATTACTTGGAGTTTACTCTTCAGATTGTCTTGTTTATGTAGCCTGAGGGAAgaatt

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651004.1 lncRNA downstream 52500 2392597 ~ 2394885 (-) False LOC103040233
XR_454875.3 lncRNA downstream 52500 2393836 ~ 2394885 (-) True LOC103040233
TU187231 lncRNA downstream 52522 2392661 ~ 2394863 (-) False LOC103040233
TU187232 lncRNA downstream 52522 2392661 ~ 2394863 (-) False LOC103040233
TU187230 lncRNA downstream 52522 2394083 ~ 2394863 (-) False LOC103040233
TU187280 lncRNA upstream 43544 2507832 ~ 2531897 (-) True G138400
TU187257 lncRNA upstream 58238 2522526 ~ 2529626 (-) True G138383
TU187259 lncRNA upstream 62448 2526736 ~ 2529626 (-) False G138383
TU187279 lncRNA upstream 89864 2554152 ~ 2570647 (-) True G138399
TU187289 lncRNA upstream 110032 2574320 ~ 2594954 (-) True G138408
XM_015606178.2 mRNA downstream 5918 2437569 ~ 2441467 (-) True LOC107197650
XM_022677794.1 mRNA downstream 25861 2407274 ~ 2421524 (-) False LOC103043218
XM_007250626.3 mRNA upstream 13407 2477695 ~ 2486894 (-) True LOC103042176
XM_007250627.3 mRNA upstream 23722 2488010 ~ 2491153 (-) True imp3
XM_007250629.3 mRNA upstream 50816 2515104 ~ 2520897 (-) True LOC103043115
XM_007250630.3 mRNA upstream 67970 2532258 ~ 2542943 (-) True LOC103043419
XM_007250632.3 mRNA upstream 100242 2564530 ~ 2567513 (-) True tctex1d1
TU186973 other downstream 1345892 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 1740437 695903 ~ 706948 (-) False LOC111194217
TU187245 other upstream 14493 2478781 ~ 2486751 (-) False LOC103042176
XR_002651005.1 other upstream 586112 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 1368433 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 1383712 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 1867362 4331650 ~ 4335889 (-) False LOC103034146

Expression Profile