RNA id: XM_022677805.1


Basic Information

Item Value
RNA id XM_022677805.1
length 3643
RNA type mRNA
GC content 0.54
exon number 21
gene id LOC103043822
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2571406 ~ 2588323 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caccggccgCTAGACTGCGCTGTCAATTGTGCCTCTGTTTTAGGAGccgggtgtgtgtgagtgtttgtgggtgtgtgtgagtgtgtgtatgtgtgtgttgtttccTCCAGCGGGATAAACctgctctatctctccctcAGTGTCCCTCACTGTCCTCAGCATCTCCAGCATCTCCAGCATCTTCCCGAGGAGAAAGAAGGAGGAGCAGAGAACCGGAATTTCAGGATTATGTACCGTCCTTTCGCCGACCTCTGTCCCCGTATCCTTCGCCCGTCTCCTCCTCTCTGCCGGAACACAGCGGAATGAGAAGCTGCAACCATGATGGAGGGACTGAAAAAGCGTACCCGAAAGGCGTTCGGGTTACGCAAGAAAGAGAAGGACACTGACTCCACGGGATCACCAGACAAGGAAAAATCAAAAAAGGCCAATGGAGCCCCAAATGGTTTCTATGGCGAGATCGACTGGGATCGATATAACTCTCCAGATGTGGATGATGAGGGATACAGCATCAGACCTGGAGAGCAGGGGGCGACGACCCTCAAAACCAAAACCTTCTACTCATCCAGCGAATCAGAGGGTGAGGATGAGCAGGGAAAGAAGTTTAAGATTAAGATCAAGCCCCTGGCACCAGACAACGGTACTGTGCCCACCATGGATGAGCTGAAGGCCTCTGTGGGCACCCTGGCCATCTCTCCCTCACCGCTGTGCCAGCTCAAACGGAACATATcaaGTGAGGAGATAGCCAGGCCAAGACGCTCAACCCCTACACCCTCCCCAACCCCAGGGCCTTGTCCCGATACGCCAAGTAAGAGGTTATCGGACAACACCTCGTCTTTCTTCGGCCCTCCTTTTGAGACAAACTTTGAAGCACAGAATGCAGAAGTTTTTATAGTGGAACCAGAGCTATGGTGTCAATCAACTCCACGGGCCGCCTCCCCACTGAACAGAAGTTTCCCCACAGGAGctcctcctcctcttcctcccaaGAACATTCCTCCCACTCCACCAGTCTTCAGCTCCAGCTCTGTAGAATCTTCTGGTTATTACAGCGTGGTTCCCAGCGTGGGAGGGGAGGGATCCACCTCTGCGTATCGGGACGTCCTGTTGTCGGACAGTACCGCGGGACCGGTGATGCCGGATCTGGATAACGTGTTCGGGCCGGCGGAGACGCGGCGCTGCAGGTCTGAGACCGAGGCGGTTCAGTGCAGCTGGGTCAGCTTCAGCGACGGCTCCCCCTCCAGACCCCCGCCCCCTGACGAACCCGCCCCCTCCCCGCCCCTCTCCTCCTCCCCCGCGGACTCGCCCCCTGCATCACCCATCAACCTCCCCCCTCCAGACTCGCCCCCGCCCCCGCTGCACCCGATCCCACCCCCGGACTCTCCTCCACCCCCTCCGCCTTCCATCTCTCGTCCTCCAGACTCCTCCCCCGAGGATCTCTCGCCTCCTCTACCCTCCGCCTTCCAGCTCCAGGAACCCTTCCCAAGATGCCTCTCCCCCAGCGCCCCCCTCACCCCCGCCAGCCCCAGCCTCCCCCCTCTACCCGCCGAGCGCGCCGCGTACGGGACGGTCCCGCCCCCTCTGCTCCTGCGGGACGAGGCCCGGAGAACCCCGGACTCTGTAGGACTTCGAGAAGAACTTCTCTCTTATTCTTGTTCACCCAAAGACCTCACTCCAGGAGGACTGCGTGGAACCCCCCCTCCGCTGCCCCCGCCCACATACAGGAGTATAGTAGCTTCCCCTGGACCTGGCAGCGGTACTTCCTCTCCTGCTCGGCCTGGCACACCTCTATCAGCGGGCAGTCCaataccaccactaccaccacgaCCGTCCTCACGACCTAAACTCCCACCTGGCAAACCAAACGTAGGAGAACTGTCCCGGTCCTTCAGTCCTCCCGTCCACTCTTGGAGTCCTCCACCCTTCGCTCCTCTGGCTCGAGCAGAAAGCacctcctccatctcctccgtGACCTCACTCAGCGCCGCCTCTACGCCCACGTTGGGCCGAGATCTCAACCTGTCCGTCTCAGtttgttCCAGAGGCCCAAGCCCTCTCACCATGGGTCCACAGGACACCCTGCCTGTTGCAGCCGCCTTCACCGAGACCATTAGCGCTTACTTTAAAGGAGCTGACCCCAGCAGATGTGTGGTGAAGATAACTGGAGAGATGGTGCTGTCCTTCCCAGCCGGCATAACGAGACACTTCTCCAACCATCCCACCCCACCAGTCCTGACCTTCACCATCAGCCACTACAGCCGGCTGGAGCAGGTCCTCCCCAACCCTCAGCTGCTCTGCTGTGACACCATGCCAACTGCCTCTGACTGTAAGGAGTTTTGGGTAAACATGCCCAACCTGATGACTCACCTGAAGAAAGTGGCTGACCAGCGGCCTCAGGCCACCTATTACAACGTGGACATGCTGAAATACCAGGTGTCGACGCAGGGCATCCAATCAACTCCTCTAAACCTGGCAGTGAGCTGGAGAGGAGACCCCAACAGCACAGACCTCAGGATAGACTATAAATACAACGCAGAGGCCATGCTGAGCCCCGTGCCCCTCACAAACATCCAGTTCATGGTGCCCGTCGACGGTGGCGTGATGAAAGTTCAGGCCATGCTGCCGCCAGCCACCTGGAACCAGGAAACACAGAAGATACTGTGGAAGATATCAGAACTGTCTCAGAAATCAGAAAACGGAGGAGTGGGGGCGCTGCTGGGCCGCTTCCAGCTGTCAGAAGGTCCCAGTAAGCCGTCTCAGCTGGCCGTGCAGTTCAGCAGTGAGGGGAGCACTCTGTCCGGCTGTGATTTTCAGCTGATGGGATCGGGTTATAGACTCTCGCTGGTCAAGAAAAGATTCTCTGCAGGTAAATATTTAGCAGATAACTGacgctgcttctgctgctgctgtaaatgAAGGACATGACCTAAGCGTCTGCAGAGCGGATTGGTCTGAGATGGGGAGAAGTGAGGACGCTTCACCACTAAAGAgacttttaacacatttttaatcctTGAAGGACAGAAAAACCCCAGACTAGTTTCTCTCTGGTGTAGAATATCAtccgtgtgtttgtgtgtatgtgtgtagtagCAGATATTGTATGTGTATACAGTAAATTTCAGGACAAACGCAATATGCAAGAAGGCAGAGTCTCTCCTGTTTCTGAGTTGGGTGCGCATCGTCTCTCTGCCCGCGAATCAGACGAGTTCAGACTGTTCACACTCAGTGAAGCTCGGCGTGCTGCTGTTAAACCCAGGGTTAGCAtcgcagcagaagcagcagcagcagaagtgaTGGTGAGatctctgttctgttctgttatcAGTTCTAttttaatccttttatttttccacagaagaaaaacacacacaatacccATCATGCAGGCTTTAAAACTTATCATGATAAAAAGGATGGAAATTAAGGGTTTTTTATGATCAGATTCAGTTTTTTCATTCGACGTCCAGCAGCTGATGAATTACTGTACATGACTGTTGTtttatatacactttattattgttaaaaataaaagatgatAAAGTTTGTTGGTTAATTATATCATACAGTTGGTTAACTGACAGTTGGttaattataaaatacagtgaaatgttaaaaaaaataggaaatagaaaaataacctttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187279 lncRNA downstream 759 2554152 ~ 2570647 (-) True G138399
TU187280 lncRNA downstream 39509 2507832 ~ 2531897 (-) True G138400
TU187257 lncRNA downstream 41780 2522526 ~ 2529626 (-) True G138383
TU187259 lncRNA downstream 41780 2526736 ~ 2529626 (-) False G138383
XR_454875.3 lncRNA downstream 176521 2393836 ~ 2394885 (-) True LOC103040233
TU187299 lncRNA upstream 30684 2619007 ~ 2656437 (-) True G138416
TU187297 lncRNA upstream 91721 2680044 ~ 2748727 (-) True G138414
TU187298 lncRNA upstream 121073 2709396 ~ 2745139 (-) True G138415
TU187333 lncRNA upstream 177884 2766207 ~ 2767115 (-) True G138445
TU187334 lncRNA upstream 180676 2768999 ~ 2855818 (-) True G138446
XM_007250632.3 mRNA downstream 3893 2564530 ~ 2567513 (-) True tctex1d1
XM_007250630.3 mRNA downstream 28463 2532258 ~ 2542943 (-) True LOC103043419
XM_007250629.3 mRNA downstream 50509 2515104 ~ 2520897 (-) True LOC103043115
XM_007250627.3 mRNA downstream 80253 2488010 ~ 2491153 (-) True imp3
XM_007250626.3 mRNA downstream 84512 2477695 ~ 2486894 (-) True LOC103042176
XM_022677807.1 mRNA upstream 21387 2609710 ~ 2672633 (-) False LOC103044624
XM_022677806.1 mRNA upstream 21387 2609710 ~ 2672633 (-) False LOC103044624
XM_022677808.1 mRNA upstream 21387 2609710 ~ 2672601 (-) False LOC103044624
XM_022677809.1 mRNA upstream 21387 2609710 ~ 2670787 (-) False LOC103044624
XM_007250636.3 mRNA upstream 21387 2609710 ~ 2651011 (-) True LOC103044624
TU187245 other downstream 84655 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 1469913 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 1864458 695903 ~ 706948 (-) False LOC111194217
XR_002651005.1 other upstream 462077 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 1244398 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 1259677 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 1743327 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 1744810 4333133 ~ 4338197 (-) False LOC103034146

Expression Profile