RNA id: XM_022677852.1


Basic Information

Item Value
RNA id XM_022677852.1
length 2653
RNA type mRNA
GC content 0.50
exon number 11
gene id ripk2
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4128532 ~ 4142618 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctagtGACAGAGCGCAGATTCACCGCTGACAGTTTCTTTTCGTTAAGTTTATAAATCGTCCGCAGGTCGCGTGCAGTTTTCTGGGTTATCGGAAACTTTACCGAATATCGTTTTATTAgagctttttttaatattagagATTTTTTCCTGTTAAGCTCCGTAAACCGACCGTTCTCTCCAGTCGAGTGGGTTATCGTTGGCTGGAGCGCCAGTCTTCACCGTCCCCGCCTCCTGTCCCTCAGTCATGCCGTTAATCAGACGCTCCGGCTCGGCCGCCTCGTCCGCGGCGCACCGCGGGGATTTTCGCTAACCGGCGGCGCTGACCGTCTCCGCATTGTTTCCGTTTTTCGGTCGCAATGGAGCCCGCAATGGGCTGCGTGAACATCGGCAGCCTGACCAGCGCGCTGCCCGTGATCCCCTACCGCAAGCTGACCGACCTGCACTACATCAGCAAGGGCGGCTTCGGCACCGTGTTCCGGGCGCTGCACAGCGACTGGAGGACCACCGTCGCCATCAAGTGCCTGAAGCTGGACTCGCCCGTCGGGGAGAGGGAAAGAAATTGTCTTCTGAAAGAAGCTGAGGTGCTACACAAGGCCCGGTTCAACCACATAATTCAAATATTTGGCGTGTGCAACGAGCCTGAGTTTTTCTGCATAGTTACAGAGTACATGACCAATGGATCTCTGGATGAACTTCTGCACGAGAAAAACATGTACCCAGTGGTGGCCTGGCCGCTGCGACTTCGAATTCTGTATGAAATTGCACTTGGAGTCAACTTCCTCCACAACATGACCCCTCCGCTGCTCCATCATGATCTGAAAACACAGAATATTCTGCTGGATGGAGAGTACCATGTAAAGATAGCTGACTTTGGCTTGTCTAAATGGCGGCAGCTCTCAATCAGCACAAGGTCTGGCTCGAAGCCTGCTGAGATGGGCGGTACTGTCATCTATATGCCGCCCGAAGAGTATGAACCCAATAAGACCCGGCGAGCTGATGTCAAACAGGACATGTACAGTTATGCCATCATTATGTGGGAAGTGCTGTCGAGACGGATACCGTATGAAGATGCCACCAACCCTATGCAGATCATGTTCAGTGTCCTGCGGGGATTGAGGCCTGATACAGGACCGGACAGTCTCCCATCAGACATCCCCAGCAGGGAGACCCTCATCAGCCTGATGACCAGTGGTTGGACTTCCAATCCAGACGAAAGGCCTTCATTTATCAATTGTCTTATTGAACTGGAGCCCATGTTGAGGAGGTTTGATGAGATTGAAGTCCTGGAGGCAGTACTGGAGGTCAAAAGATCCAAATTCATGAGGCCACAAAGCAGCGGCTCATCAGTGCCAGCCAATGGGAAACCGGTGGAGGAAAAGGGCTTTAAGATGCAGACTCCCTGGCCAGAAAACAGTTCCACATCGGGATCTGGGTCCTGCTCCTCCCAGGAGACGGATATGTCCCAACCAGGCTTCCTTACAATCTCGAATCCTTTTCATGGTGCACATGGACCCCCATCATCAGTTATATCTTTGCCTATGGACGCTCCAAAGCCTCTGATAGATCAGAGCTGTCAAAACAACTTGAACCCTGCCTACCAGACAGCCTATCCCATCTCTGATTTCAACATCCCCCCTAAACCACACCCTCCACAGAGCGAGAGCGACGTACCCATCAATATCCACCCGCTCACCCTGCAGGCTCAAGACTTCCCTCTGTCTATGGACAGTCAGGGACCGGCGGCGCGCTGGATCGCCTCTCGTCGGGAGGAGGTGGTGCGGCAGATGACGGAGGCTTGTTTGAACCAGAGCTTGGATGCCCTGCTGGCCCGTGAGCTGCTGATGCGCGAGGACTATGAGCTGGTCTCCAATCAGCCCACGCGCACCGCTAAAGTGCGCAAGCTGCTGGACACGTGCGAGCGCCACAGTGAGGAGTTCTGCCGCATAGTGGTGCGAAAACTTCAGGAGAACAAGCAAATGGGGCTGCAGCCTTTTCCTGAACTCACCTCCCCGACACCACCTCCGCCTTACAGCGCCCCCAGCGCTCCCCCCTTCTCCACCTCCTACAACAACAACCGCAACATTTTCTGACGCTCCAGACCCTTCACGCCTTCTTCTGAACTGCTTTTTAAGGGTGGATCATGCTTTGTGTTCCTATGTTCAGACTGAAAACTGCTACATTGCTTTTTTTGTGATTTGAACACGTGTCATTGCCTTTTTCTGGCCAGATAATGGATTTTTTCACATCAGCCCTTGTTTTGTAGGGTCTCTTATTAATTAGGTCCTGTCTCCTTGTTAGCATTAGGTGTTACAGGACTAAGTGTCAGCAGAAAACCTTCTGATGATGAACCTCTTTGCAACTTGTGTCTTCCTCTTGAAAGCTCATGATGATGTTTTCCATGACCTGCACAAATACAAAGCCCTTATAATAATGTAGCTTTTATACGCCGTCACAGTCAGTTGGTTTGTTGAAAGCTGTATTTTTCTCTGTCATAGCAGTAAGGCTTTCTAAAAATAATCTGACGTATGTAAAGAATGATTACAAGCTTACATTTGTTTATACTCGTGTCACTAAAGTCAGAGATAACTGGATTTTATATCACAAGTTTTTTGATCTatcgtattttacagactataaggcacatttaaaatct

Function

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187866 lncRNA downstream 51066 4075500 ~ 4077466 (-) True G138817
TU187864 lncRNA downstream 77301 4050167 ~ 4051231 (-) True G138815
TU187834 lncRNA downstream 186058 3940636 ~ 3942474 (-) True G138794
TU187739 lncRNA downstream 286752 3841399 ~ 3841780 (-) True G138716
TU187728 lncRNA downstream 297240 3830667 ~ 3831292 (-) True G138706
TU187902 lncRNA upstream 19594 4162212 ~ 4162480 (-) True G138834
TU187888 lncRNA upstream 30361 4172979 ~ 4175596 (-) True G138822
TU187924 lncRNA upstream 37206 4179824 ~ 4234182 (-) True G138837
TU188046 lncRNA upstream 189776 4332394 ~ 4351126 (-) True G138910
TU188049 lncRNA upstream 253472 4396090 ~ 4396932 (-) True G138913
XM_022677850.1 mRNA downstream 6539 4105554 ~ 4121993 (-) False LOC111194272
XM_022677848.1 mRNA downstream 6539 4105554 ~ 4121993 (-) False LOC111194272
XM_022677847.1 mRNA downstream 6539 4105554 ~ 4121993 (-) False LOC111194272
XM_022677849.1 mRNA downstream 6539 4105554 ~ 4121993 (-) True LOC111194272
XM_007250682.3 mRNA downstream 54254 4068778 ~ 4074278 (-) True eif4a2
XM_022677696.1 mRNA upstream 38571 4181189 ~ 4225637 (-) True LOC103023384
XM_022677698.1 mRNA upstream 94051 4236669 ~ 4269902 (-) True LOC103024655
XM_022677857.1 mRNA upstream 100848 4243466 ~ 4245836 (-) True LOC103024348
XM_007250743.3 mRNA upstream 138909 4281527 ~ 4289548 (-) True LOC103024967
XM_022677859.1 mRNA upstream 147794 4290412 ~ 4304086 (-) False LOC103025293
TU187750 other downstream 276850 3848000 ~ 3851682 (-) False LOC103047802
TU187730 other downstream 294862 3832721 ~ 3833670 (-) True G138708
XR_002651005.1 other downstream 1065773 3050400 ~ 3062759 (-) True LOC103045355
TU187245 other downstream 1641781 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 3027039 1050532 ~ 1101493 (-) True G138199
TU188022 other upstream 189032 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 190515 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other upstream 193373 4335991 ~ 4338094 (-) False LOC103034146
TU188266 other upstream 1133488 5276106 ~ 5276468 (-) True G139074
TU188315 other upstream 1187460 5330078 ~ 5330805 (-) True G139105