RNA id: LOC103027076


Basic Information

Item Value
RNA id LOC103027076
length 479
RNA type V_segment
GC content 0.44
exon number 2
gene id LOC103027076
representative True

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 82398 ~ 82963 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAATCCATCACACATCAGCTCAGCTGcaacctccaccatgtttagcaGATCTCTAATACTGCTGATACTCACTAACCTACCATGTTTTCAGAGTCAGACTCTCACTCAGTCtgaatctgtgattaaaaaacctgGAGAATCTCATAAACTGACCTGTACAGGATCTGGATTTACATTCAGCAGCTATTATATGCACTGGATCAGACAGGCTCCTGGGAAAGGACTGGAGTGGATTGCTAGAATTTCAAGAGACAGCTCTAACACCAAGTATTCTCAGTCAGTTGAGGGAAGATTCACAATCTCCAGATCTGACTCCAGCAGTCAGCTATATTTACAGATGAACAGTCTGAAGAGTGAAGATACTGCTGTGTATTACTGTGCCAGATACACACAGTGGttgaaaacagcagcagagctgtaCAAAAACCCCTGGAGAAGCTTCAGTGCGATTCAGAGAGAAGTTTAACCAGCAGAGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384740 lncRNA upstream 42730 38119 ~ 39668 (+) True G280298
TU384738 lncRNA upstream 44742 36371 ~ 37656 (+) True G280297
TU384731 lncRNA upstream 50865 22417 ~ 31533 (+) True G280290
TU384778 lncRNA downstream 46787 129750 ~ 134727 (+) False G280313
TU384807 lncRNA downstream 94616 177579 ~ 177994 (+) False LOC111190164
TU384824 lncRNA downstream 108775 191738 ~ 247699 (+) True G280332
TU384826 lncRNA downstream 124611 207574 ~ 207855 (+) True G280334
TU384837 lncRNA downstream 157391 240354 ~ 249052 (+) True G280338
XM_022663913.1 mRNA downstream 150849 233812 ~ 236578 (+) True LOC111190154
XM_007242509.3 mRNA downstream 157385 240348 ~ 244545 (+) True LOC103040202
XM_022663914.1 mRNA downstream 163617 246580 ~ 258409 (+) True LOC111190155
XM_022663915.1 mRNA downstream 203096 286059 ~ 287629 (+) True LOC111190159
LOC111190144 other upstream 24837 57049 ~ 57561 (+) True LOC111190144
LOC111190138 other upstream 37867 43824 ~ 44531 (+) True LOC111190138
LOC107197483 other upstream 66257 15658 ~ 16141 (+) True LOC107197483
TU384788 other downstream 9174 92137 ~ 92613 (+) True G280315
LOC111190140 other downstream 13021 95984 ~ 96561 (+) True LOC111190140
LOC111190147 other downstream 14612 97575 ~ 100328 (+) True LOC111190147
TU384781 other downstream 19600 102563 ~ 106783 (+) False G280313
TU384786 other downstream 19600 102563 ~ 106783 (+) False G280313

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1275331 True 1549 lncRNA 0.38 3 NC_048576.1 84421846 ~ 84423885 (-)
eurasian perch (Perca fluviatilis) TU207833 True 386 lncRNA 0.48 2 NC_053126.1 9872321 ~ 9878863 (+)