RNA id: LOC107197483


Basic Information

Item Value
RNA id LOC107197483
length 383
RNA type V_segment
GC content 0.43
exon number 2
gene id LOC107197483
representative True

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 15658 ~ 16141 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTCTGATTAGTTCTCATAATGAAGATCACATTCTCCTTATTACTGCTACTGCTCACCTTCAGCAgtGTGAAATGTGAAAGTATGGAATCATTAGAAACTGCAGTTCAGATAAAACCTGGAGAAACTCTGAGTCTCTCCTGTAGAGGATCTggatttagctttgattgctgtaACATGCACTGGATCAGACAACAGGCTGGAAAACCACTGGAGTGGGTGGGATATATTTCCAACCTTGCAGGGAGCAAAGGCTATGGAGAATCATTTCAAGGCCGAACTGAAATCAGCAGAGATAATTCTAACAGCATGGTGTATCTCAAACTGTCTGGTGTGACAGCAGAGGATTCAGCTGTGTATTACTGCGCTCGACAAACACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384731 lncRNA downstream 6276 22417 ~ 31533 (+) True G280290
TU384738 lncRNA downstream 20230 36371 ~ 37656 (+) True G280297
TU384740 lncRNA downstream 21978 38119 ~ 39668 (+) True G280298
TU384778 lncRNA downstream 113609 129750 ~ 134727 (+) False G280313
TU384807 lncRNA downstream 161438 177579 ~ 177994 (+) False LOC111190164
XM_022663913.1 mRNA downstream 217671 233812 ~ 236578 (+) True LOC111190154
XM_007242509.3 mRNA downstream 224207 240348 ~ 244545 (+) True LOC103040202
XM_022663914.1 mRNA downstream 230439 246580 ~ 258409 (+) True LOC111190155
XM_022663915.1 mRNA downstream 269918 286059 ~ 287629 (+) True LOC111190159
LOC111190138 other downstream 27683 43824 ~ 44531 (+) True LOC111190138
LOC111190144 other downstream 40908 57049 ~ 57561 (+) True LOC111190144
LOC103027076 other downstream 66257 82398 ~ 82963 (+) True LOC103027076
TU384788 other downstream 75996 92137 ~ 92613 (+) True G280315
LOC111190140 other downstream 79843 95984 ~ 96561 (+) True LOC111190140

Expression Profile