RNA id: LOC111190136


Basic Information

Item Value
RNA id LOC111190136
length 576
RNA type V_segment
GC content 0.41
exon number 2
gene id LOC111190136
representative True

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 145407 ~ 146074 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATATTTAATCATGTTGTGGTGAAGATCAACAGTTTATTCTTGTTCATCTTCAACATCAACCATGTTCTCTACTCCTCTACTGCTGTTACTGTTAGCAGCTGTTTCCTgTGTTCACTGTGTTGAACTGAGCCAGTCTGGATCTACAGTTGTAGCACCTGGTCAATCAACTACACTGACCTGTAGAGTTTCTGGATATTCACTGACTGATAGCAGCTACTGTACAGACTGGATACGACAGCCTGCAGGAAAAGCTCTGGAGTGGATTGGAGGTATATGTGGTGATGGTAGCACAGACTATAGTGATAAACTGAAGAGCAGGTTTGAAGTTACCAGAGACACATCCAGCAGCACAGTGTCTTTAAGAGGACAGAATCTGCAGACTGAAGATACAGCTGTGTATTACTGCGCTCGTGAAGACCACAGTGAAACACATCAACAGAAACCCTGTACAAAAACCCTCTATCCCAGAACAACATACAACCCTTTAGCTAACATTATGTATTTGATATTTTCTTTTGTAGAAAGCAGACATATCAAGTAGCAGCTAAATCATTTCATATCCATTTCAAGTAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384778 lncRNA upstream 10680 129750 ~ 134727 (+) False G280313
TU384740 lncRNA upstream 105739 38119 ~ 39668 (+) True G280298
TU384738 lncRNA upstream 107751 36371 ~ 37656 (+) True G280297
TU384731 lncRNA upstream 113874 22417 ~ 31533 (+) True G280290
TU384807 lncRNA downstream 31505 177579 ~ 177994 (+) False LOC111190164
TU384824 lncRNA downstream 45664 191738 ~ 247699 (+) True G280332
TU384826 lncRNA downstream 61500 207574 ~ 207855 (+) True G280334
TU384837 lncRNA downstream 94280 240354 ~ 249052 (+) True G280338
TU384845 lncRNA downstream 106589 252663 ~ 254221 (+) True G280345
XM_022663913.1 mRNA downstream 87738 233812 ~ 236578 (+) True LOC111190154
XM_007242509.3 mRNA downstream 94274 240348 ~ 244545 (+) True LOC103040202
XM_022663914.1 mRNA downstream 100506 246580 ~ 258409 (+) True LOC111190155
XM_022663915.1 mRNA downstream 139985 286059 ~ 287629 (+) True LOC111190159
LOC111190148 other upstream 5766 137550 ~ 139641 (+) True LOC111190148
TU384770 other upstream 7206 106293 ~ 138201 (+) False G280313
LOC111190131 other upstream 10738 134179 ~ 134669 (+) True LOC111190131
LOC111190129 other upstream 13253 131584 ~ 132154 (+) True LOC111190129
TU384783 other upstream 15302 106293 ~ 130105 (+) False G280313
TU384803 other downstream 3583 149657 ~ 150299 (+) True LOC111190149
LOC111190149 other downstream 3635 149709 ~ 150307 (+) False LOC111190149
LOC103032846 other downstream 13226 159300 ~ 160007 (+) False LOC103032846
TU384804 other downstream 13231 159305 ~ 160048 (+) True LOC103032846
LOC111190150 other downstream 19168 165242 ~ 165724 (+) True LOC111190150

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU254601 True 1510 lncRNA 0.43 2 NC_053129.1 28296037 ~ 28646111 (-)
striped catfish (Pangasianodon hypophthalmus) TU254601 True 365 TUCP 0.47 2 NC_047607.1 22176467 ~ 22176921 (+)